Locus 6521

Sequence ID X_DroMel_CAF1
Location 16,339,461 – 16,339,581
Length 120
Max. P 0.999266
window10648

overview

Window 8

Location 16,339,461 – 16,339,581
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 99.06
Mean single sequence MFE -33.70
Consensus MFE -33.37
Energy contribution -33.37
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.99
SVM decision value 3.47
SVM RNA-class probability 0.999266
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16339461 120 - 22224390
AUGCUGUUCUUUAUAGUCAUCAUCUUCCUAGGUUCAUUCUAUCUUGUGAAUUUGAUUUUGGCCAUUGUUGCCAUGUCGUAUGACGAAUUGCAAAAGAAGGCCGAAGAAGAAGAGGCUGCC
.............(((((.((.(((((.(((((((((........)))))))))..(((((((....((((....(((.....)))...)))).....)))))))))))).))))))).. ( -33.90)
>DroVir_CAF1 1488 120 - 1
AUGCUGUUCUUUAUAGUCAUCAUCUUCCUAGGUUCAUUCUAUCUUGUGAAUUUGAUUUUGGCCAUUGUUGCCAUGUCAUAUGACGAAUUGCAAAAGAAGGCCGAAGAAGAAGAGGCUGCC
.............(((((.((.(((((.(((((((((........)))))))))..(((((((....((((..((((....))))....)))).....)))))))))))).))))))).. ( -33.60)
>DroGri_CAF1 1503 120 - 1
AUGCUGUUCUUUAUAGUCAUCAUCUUCCUAGGUUCAUUCUAUCUUGUGAAUUUGAUUUUGGCCAUUGUUGCCAUGUCAUAUGACGAAUUGCAAAAGAAGGCCGAAGAAGAGGAGGCUGCC
.............(((((.((.(((((.(((((((((........)))))))))..(((((((....((((..((((....))))....)))).....)))))))))))).))))))).. ( -33.60)
>DroWil_CAF1 2980 120 - 1
AUGCUGUUCUUUAUAGUCAUCAUCUUCCUAGGUUCAUUCUAUCUUGUGAAUUUGAUUUUGGCCAUUGUUGCCAUGUCAUAUGACGAAUUGCAAAAGAAGGCCGAAGAAGAAGAGGCUGCC
.............(((((.((.(((((.(((((((((........)))))))))..(((((((....((((..((((....))))....)))).....)))))))))))).))))))).. ( -33.60)
>DroYak_CAF1 1479 120 - 1
AUGCUGUUCUUUAUAGUCAUCAUCUUCCUAGGUUCAUUCUAUCUUGUGAAUUUGAUUUUGGCCAUUGUUGCCAUGUCGUAUGACGAAUUGCAAAAGAAGGCCGAAGAAGAGGAGGCUGCC
.............(((((.((.(((((.(((((((((........)))))))))..(((((((....((((....(((.....)))...)))).....)))))))))))).))))))).. ( -33.90)
>DroMoj_CAF1 1454 120 - 1
AUGCUGUUCUUUAUAGUCAUCAUCUUCCUAGGUUCAUUCUAUCUUGUGAAUUUGAUUUUGGCCAUUGUUGCCAUGUCAUAUGACGAAUUGCAAAAGAAGGCCGAAGAAGAGGAGGCUGCC
.............(((((.((.(((((.(((((((((........)))))))))..(((((((....((((..((((....))))....)))).....)))))))))))).))))))).. ( -33.60)
>consensus
AUGCUGUUCUUUAUAGUCAUCAUCUUCCUAGGUUCAUUCUAUCUUGUGAAUUUGAUUUUGGCCAUUGUUGCCAUGUCAUAUGACGAAUUGCAAAAGAAGGCCGAAGAAGAAGAGGCUGCC
.............(((((.((.(((((.(((((((((........)))))))))..(((((((....((((..((((....))))....)))).....)))))))))))).))))))).. (-33.37 = -33.37 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:52 2006