Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,825,341 – 1,825,441 |
Length | 100 |
Max. P | 0.970675 |
Location | 1,825,341 – 1,825,441 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 76.41 |
Mean single sequence MFE | -32.63 |
Consensus MFE | -22.92 |
Energy contribution | -23.00 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -2.01 |
Structure conservation index | 0.70 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1825341 100 + 22224390 CUUACAUACGUAUGUACAUAUAGUGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU ..((((((((..((((((((((.(((...(((((((.........))))))))))...))))))))))....)))))))).(((((.......))))).. ( -31.70) >DroSec_CAF1 26026 100 + 1 CUUACAUACAUAUGUACAUAUAGCGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU ..((((((((..((((((((((((((...(((((((.........)))))))))))..))))))))))....)))))))).(((((.......))))).. ( -36.20) >DroSim_CAF1 27835 100 + 1 CUUACAUACAUAUGUACAUAUAGCGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU ..((((((((..((((((((((((((...(((((((.........)))))))))))..))))))))))....)))))))).(((((.......))))).. ( -36.20) >DroEre_CAF1 25603 75 + 1 -----------------------CGGACAGCCGCUGGUGCCACUGCGUUGGCCUGCGGUG--UGCGCACAUUUGUGUGUGCUUGCUUGUAAUCAGCGACU -----------------------.....((.((((((((((((((((......)))))))--.))((((((....)))))).........))))))).)) ( -30.30) >DroYak_CAF1 27491 75 + 1 -----------------------UAGCUCGCCAUUGGCGACACUGCGUUGGCCUGCGGUG--UGCGCACAUUUGUGUGUGCUUGCCUGUAAUCAGCGACU -----------------------..(((.......((((((((((((......)))))))--)(((((((....))))))).)))).......))).... ( -28.74) >consensus CUUACAUAC_UAUGUACAUAUAGCGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU ...............................(((((((.((((((((......))))))))(((.((((((....)))))).))).....)))))))... (-22.92 = -23.00 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:20 2006