| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,336,034 – 16,336,125 |
| Length | 91 |
| Max. P | 0.641296 |
| Location | 16,336,034 – 16,336,125 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.85 |
| Mean single sequence MFE | -23.61 |
| Consensus MFE | -5.93 |
| Energy contribution | -7.77 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16336034 91 + 22224390 -CUGUGCUGAAAAGCAAUCGCUUGCCAUUUACCAAAAAA-UCCGUGU-UUCGUGAGAGGUACAUAACUAG-------CAU--------AGCGAUGAAGAGA--A--AAAUCUA -...((((....))))(((((((((.((((......)))-)..(((.-.((....))..))).......)-------)).--------))))))..(((..--.--...))). ( -23.20) >DroPse_CAF1 7671 111 + 1 CCAGUGCACAGAAGCAAACGCUUGCCAUAUACGAAAAAGAUGUGUGUGUUCGUGUAAGAGAGAAAACUAUAUAUGUAUAUGGUAAGAGAGAGAGCGAG--AGCUAGAGAUCUA ....(((......)))....(((((((((((((......(((((.((.(((........)))...))))))).)))))))))))))(((...(((...--.))).....))). ( -28.10) >DroSec_CAF1 7156 91 + 1 -CUGUGCUGAAAAGCAAUCGCUUGCCAUUUGCCAAAAAA-UCCGUGU-UUCGUGAGAGGUACAUAGCUAG-------CAU--------AGCGAUGAAGAGA--A--AAAUCUA -...((((....))))(((((((((.((((......)))-)..(((.-.((....))..))).......)-------)).--------))))))..(((..--.--...))). ( -24.10) >DroEre_CAF1 7099 91 + 1 -CUGUGCUGAAAAGCAAACGCUUGCCAUAUGCCAAAAAG-UCCGUGU-UUCGUGAGAGGUACAUGACUAG-------CUU--------AGCGAUGAAGAGA--A--AAUUCGA -...((((....))))....(((..(((.(((.....((-((.(((.-.((....))..)))..))))..-------...--------.))))))..))).--.--....... ( -21.80) >DroYak_CAF1 8900 91 + 1 -CUGUGCUGAAAAGCAAACGCUUGCCAUAUGCCAAAAAG-UCCGUGU-UUCGUGAGAGGUAUAUAGCUAG-------CUU--------AGCGAUGAAGAGA--A--AAAUCUA -...((((....))))...(((.((.(((((((......-.......-.((....))))))))).)).))-------)..--------........(((..--.--...))). ( -20.83) >consensus _CUGUGCUGAAAAGCAAACGCUUGCCAUAUGCCAAAAAG_UCCGUGU_UUCGUGAGAGGUACAUAACUAG_______CAU________AGCGAUGAAGAGA__A__AAAUCUA ....((((....))))..((((((((.(((((...................))))).))))...........................))))..................... ( -5.93 = -7.77 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:48 2006