Locus 6516

Sequence ID X_DroMel_CAF1
Location 16,320,486 – 16,320,585
Length 99
Max. P 0.733817
window10642

overview

Window 2

Location 16,320,486 – 16,320,585
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 81.00
Mean single sequence MFE -22.22
Consensus MFE -13.30
Energy contribution -13.66
Covariance contribution 0.36
Combinations/Pair 1.21
Mean z-score -1.99
Structure conservation index 0.60
SVM decision value 0.43
SVM RNA-class probability 0.733817
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16320486 99 - 22224390
UAA-CCAUGGCUUUAAGCAUCGCAUUGUAGAUGUAGAUAACUAAAUUGUGAUCGUAUAUUUGCAGGUACUUAACCUUUUCUUAGCCUUGCUUUUGUCCAA
...-...((((...(((((..((..(((((((((((((.((......)).))).))))))))))(((.....)))........))..)))))..).))). ( -25.60)
>DroSec_CAF1 21972 98 - 1
UAA-CCAUGGCCUAAAGCAUCGCAUUGCAGAUGUAGAUAACUA-AUUGUGGUCGUAUGUUUGCAGGUACUUAACCUUUUCUUAGCCUUGCUUUUGUCCAA
...-...(((.(.((((((..((..(((((((((((((.((..-...)).))).))))))))))(((.....)))........))..)))))).).))). ( -28.10)
>DroSim_CAF1 5118 87 - 1
UAA-CCAUGGCCUAAAGC----------AAAUGUAAAUAACUA-AUUGUGGUCGUAUGUUUGCAGGUACU-AACCUUUUCUUAGCCUUGCUUUUGUCCAA
...-...(((.(.(((((----------((.((((((((((((-....))))....))))))))(((...-.)))...........))))))).).))). ( -18.20)
>DroEre_CAF1 22569 92 - 1
----CCAAGGCUUAAAGCAACGCGUUUCA---GCCGAUAACUA-AUUGACGUCGUAUAUUUGCAGGUACUUAACCUUUUCUUAGCCUUGCUUUUGUCCAA
----.(((((((....((((.((......---))((((..(..-...)..)))).....))))((((.....))))......)))))))........... ( -18.80)
>DroYak_CAF1 22156 95 - 1
UAAAUAAAAGCUUAAAGUAUUGCAUU-GG---GCAGUUAACUA-AUUGAUGUUGUAUACUUGCAGGUACUUAACCUUUUCUUAGCCUUGCUUUUGUCCAA
...((((((((...((((((.((((.-.(---..((....)).-.)..))))...))))))..((((.....))))............)))))))).... ( -20.40)
>consensus
UAA_CCAUGGCUUAAAGCAUCGCAUU_CA_AUGUAGAUAACUA_AUUGUGGUCGUAUAUUUGCAGGUACUUAACCUUUUCUUAGCCUUGCUUUUGUCCAA
........((.(.((((((..((.........(((((((((............)).)))))))((((.....)))).......))..)))))).).)).. (-13.30 = -13.66 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:47 2006