Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,320,251 – 16,320,366 |
Length | 115 |
Max. P | 0.992437 |
Location | 16,320,251 – 16,320,366 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.57 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -24.85 |
Energy contribution | -24.63 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.68 |
Structure conservation index | 0.94 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16320251 115 - 22224390 CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUU-----CCAAUUA ...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).))))))))).-----....... ( -25.50) >DroVir_CAF1 26858 117 - 1 CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCUUCAGGUGAGAGGAUCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUU---UCAAUUUA ...((((.....))))(((((((......(((((((((((.(((((((...(((.....))).(((((((.....)))))))...)))))))...)).)))))))))..---))))))). ( -29.10) >DroGri_CAF1 26308 114 - 1 CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUC------AAUUA ...((((.....)))).((((((......(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).)))))))))))------)))). ( -26.60) >DroWil_CAF1 29361 120 - 1 CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUUAUCUCGAAUUA ...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).)))))))))............. ( -25.50) >DroMoj_CAF1 27341 114 - 1 CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGAUCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUC------ACUUA ...((((((.........))))))........(((((((...(((....)))(((.((((...(((((((.....)))))))(((....)))...)))).)))....))------))))) ( -26.10) >DroAna_CAF1 22047 115 - 1 CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUU-----CCAAUUA ...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).))))))))).-----....... ( -25.50) >consensus CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUU_____C_AAUUA ...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).)))))))))............. (-24.85 = -24.63 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:46 2006