Locus 6514

Sequence ID X_DroMel_CAF1
Location 16,319,675 – 16,319,775
Length 100
Max. P 0.872981
window10639 window10640

overview

Window 9

Location 16,319,675 – 16,319,775
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 79.21
Mean single sequence MFE -27.90
Consensus MFE -18.60
Energy contribution -18.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.67
SVM decision value 0.88
SVM RNA-class probability 0.872981
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16319675 100 + 22224390
AGGUCUCAGGUCUGAGGUCUGAGGUCUGAGGUCUGAGGUCUGAGGUCUGAGGUCAGAGUUCAGAGGAUCACUGACCGGCUGAAGAACAACAACACUUAGG
.((((((((..((.((..((.((..(...)..)).))..)).))..))))((((((.(.((....)).).)))))))))).................... ( -37.10)
>DroSim_CAF1 4327 79 + 1
AGGU---------------------CUGAGGUCAGAGGUCUGAGGUCUGAGGUCAGAGUUCAGAGGAUCAGUGACCGGCUGAAGAACAACAACACUUAGG
.(((---------------------(...((((.....((((((.((((....)))).)))))).))))...))))........................ ( -23.30)
>DroYak_CAF1 21344 79 + 1
AUGU---------------------CUGAGGUCUGAGGUCUAAGGUCAGAGGUCAGAGGUCGCAGGAUCAGUGACCGGCUGAAGAACAACAACACUUAGG
....---------------------(((((((.((..((((....((((.(((((..((((....))))..)))))..)))))).))..)))).))))). ( -23.30)
>consensus
AGGU_____________________CUGAGGUCUGAGGUCUGAGGUCUGAGGUCAGAGUUCAGAGGAUCAGUGACCGGCUGAAGAACAACAACACUUAGG
.........................(((((((......(((..((((...(((((..(.((....)).)..)))))))))..)))......)).))))). (-18.60 = -18.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 16,319,675 – 16,319,775
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 79.21
Mean single sequence MFE -20.83
Consensus MFE -13.45
Energy contribution -14.57
Covariance contribution 1.11
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.65
SVM decision value 0.47
SVM RNA-class probability 0.749368
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16319675 100 - 22224390
CCUAAGUGUUGUUGUUCUUCAGCCGGUCAGUGAUCCUCUGAACUCUGACCUCAGACCUCAGACCUCAGACCUCAGACCUCAGACCUCAGACCUGAGACCU
.((.((.(((((((.....)))).((((..(((...(((((..((((....))))..)))))..)))))))...))))).))..((((....)))).... ( -25.00)
>DroSim_CAF1 4327 79 - 1
CCUAAGUGUUGUUGUUCUUCAGCCGGUCACUGAUCCUCUGAACUCUGACCUCAGACCUCAGACCUCUGACCUCAG---------------------ACCU
....((.(((((((.....)))).(((((..((...(((((..((((....))))..)))))..)))))))...)---------------------)))) ( -19.40)
>DroYak_CAF1 21344 79 - 1
CCUAAGUGUUGUUGUUCUUCAGCCGGUCACUGAUCCUGCGACCUCUGACCUCUGACCUUAGACCUCAGACCUCAG---------------------ACAU
.....(.((((........)))))((((.(.......).))))(((((..(((((.........)))))..))))---------------------)... ( -18.10)
>consensus
CCUAAGUGUUGUUGUUCUUCAGCCGGUCACUGAUCCUCUGAACUCUGACCUCAGACCUCAGACCUCAGACCUCAG_____________________ACCU
.....(.((((........)))))((((..(((...(((((..((((....))))..)))))..)))))))............................. (-13.45 = -14.57 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:45 2006