Locus 6513

Sequence ID X_DroMel_CAF1
Location 16,318,764 – 16,318,865
Length 101
Max. P 0.997783
window10638

overview

Window 8

Location 16,318,764 – 16,318,865
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 93.07
Mean single sequence MFE -30.09
Consensus MFE -25.76
Energy contribution -25.36
Covariance contribution -0.40
Combinations/Pair 1.19
Mean z-score -2.41
Structure conservation index 0.86
SVM decision value 2.93
SVM RNA-class probability 0.997783
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16318764 101 + 22224390
UAACUGAGCAAUUAAUUGAAUAAGCUGAUGAGCCGUUAAUAACCAAAGUGUUUCCACCAGCUGGCAUCAGUGUAGACAUACUGUUUCCGCUGAGCGCCAGU
..((((.((.............(((((.((((((.............).)))..)).))))).((.((((((.((((.....)))).)))))))))))))) ( -25.52)
>DroSec_CAF1 20297 101 + 1
UAACUGAGCAAUUAAUUGAAUAAGCUGGUGAGCCGUAAAUAACCAAAGUGUUUCCACUGGCUGGUAUCAGUGUAGACAUACUGUUACCACUGAGCGCCAGU
.......................(((((((((((((.....))...((((....))))))))((((.((((((....)))))).))))......))))))) ( -28.40)
>DroSim_CAF1 3427 101 + 1
UAACUGAGCAAUUAAUUGAAUAAGCUGGUGAGCCGUAAAUAAUCAAAGUGUUUCCACUGGCUGGCAUCAGUGUAGACAUACUGUUACCACUGAGCGCCAGU
..((((.((.............(((..(((((((.............).)))..)))..))).((.((((((..(((.....)))..)))))))))))))) ( -28.22)
>DroEre_CAF1 20849 101 + 1
UAACUGAUCAAUUAAUUGAAUAAGCUGGUGAGCCGUAAAUAACCAAACUGUUUCCACUAGCUGGCAUCAGUGGAGACAUACUGUUUCCACUGAGCGGCAGU
..((((.((.............(((((((((((.((..........)).)))..)))))))).((.(((((((((((.....))))))))))))))))))) ( -35.20)
>DroYak_CAF1 20398 101 + 1
UAACUGAUCAAUUAAUUGAAUAAGCUGGUGAGCCGUAAAUAACCAAAGUGUUUCCACUGGCUGGCAUCAGUGGAGACAAGCUGUUUCCACUGUGCGGCAGU
..((((.((.............(((..(((((((.............).)))..)))..))).(((.((((((((((.....))))))))))))))))))) ( -33.12)
>consensus
UAACUGAGCAAUUAAUUGAAUAAGCUGGUGAGCCGUAAAUAACCAAAGUGUUUCCACUGGCUGGCAUCAGUGUAGACAUACUGUUUCCACUGAGCGCCAGU
..((((.((.............((((((((........................)))))))).((.((((((.((((.....)))).)))))))))))))) (-25.76 = -25.36 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:43 2006