Locus 6512

Sequence ID X_DroMel_CAF1
Location 16,318,638 – 16,318,750
Length 112
Max. P 0.955715
window10637

overview

Window 7

Location 16,318,638 – 16,318,750
Length 112
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 88.61
Mean single sequence MFE -40.84
Consensus MFE -31.23
Energy contribution -31.83
Covariance contribution 0.60
Combinations/Pair 1.13
Mean z-score -2.42
Structure conservation index 0.76
SVM decision value 1.46
SVM RNA-class probability 0.955715
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16318638 112 - 22224390
CAACACUGGUGCGGGUGUGGUGGAAA-CGACCUAUCCGCCCACUGUUGCCGAGUAGUGGAAUCAUCUUAGUACAAUUCUCUACAGCGAUUCGGCAAGCAGUGCACAUAACGGA
.....(((..(((((((.((((....-).)))))))))).((((((((((((((.(((((..................)))))....))))))).))))))).......))). ( -40.27)
>DroSec_CAF1 20171 112 - 1
CAUCACUGGUGCGGGUGCGGUGGAAA-CGCCCUAUACGCCCACUGUUGCCGAGUAGUGGAAUCACCUUAGUUCAAUUCUCUACAGCGAUACGGCAAGCAGUGCACACAACGGA
......(((((((((((.((((....-)))).....)))))((((((((((.((.(((((..................))))).))....)))).)))))))))).))..... ( -39.97)
>DroSim_CAF1 3301 112 - 1
CAUCACUGGUGCGGGUGCGGUGGAAA-CGCCCUAUCCGCCCACUGUUGCCGAGUAGUGGAAUCACCUUAGUUCAAUUCUCUACAGCGAUGCGGCAAGCAGUGCACACAACGGA
.....(((..(((((((.((((....-)))).))))))).(((((((((((.((.(((((..................))))).))....)))).))))))).......))). ( -43.07)
>DroEre_CAF1 20723 112 - 1
CAUCUUUGUGGCGGUUACGGUGGAAA-CGCCCUAACCGCCCACUGUUGCCGAGUAGUGGAAACACCUUAAUUUAAUUCUCAACAGCGAUGCGGCAAGCAGCGCACAAAAAGAA
..(((((((((((((((.((((....-)))).)))))).))))(((((..((((.(((....))).........)))).)))))(((.(((.....))).)))....))))). ( -43.30)
>DroYak_CAF1 20271 113 - 1
CAUCUCUGGUGCGGUUGCGGUGGAAAUCACCCAAGCCGCCCACUGUUGCCGAGUAGUGGAAACACCUUAGUUCAAUUCUCAACAGCGAUGCGGCAAGCAGUGCAUAAAAGGCA
.......((.(((((((.((((.....))))).))))))))((((((((((.((.(((....)))....(((........))).))....)))).))))))((.......)). ( -37.60)
>consensus
CAUCACUGGUGCGGGUGCGGUGGAAA_CGCCCUAUCCGCCCACUGUUGCCGAGUAGUGGAAUCACCUUAGUUCAAUUCUCUACAGCGAUGCGGCAAGCAGUGCACAAAACGGA
.......((.(((((((.((((.....)))).)))))))))((((((((((.((.(((((..................))))).))....)))).))))))............ (-31.23 = -31.83 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:42 2006