Locus 6510

Sequence ID	X_DroMel_CAF1
Location	16,315,910 – 16,316,002
Length	92
Max. P	0.981346

overview

Window 2

Location	16,315,910 – 16,316,002
Length	92
Sequences	6
Columns	93
Reading direction	forward
Mean pairwise identity	83.32
Mean single sequence MFE	-26.98
Consensus MFE	-19.92
Energy contribution	-19.87
Covariance contribution	-0.05
Combinations/Pair	1.26
Mean z-score	-1.48
Structure conservation index	0.74
SVM decision value	-0.05
SVM RNA-class probability	0.508186
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16315910 92 + 22224390
GAUAAUCCAGUAGAUCGCUGAACAAGAUUUGCGAUCUCACGCAGAGACACAAGCCGUUUGACAGGAAUGUGCCUAGGCAUAAGAGGCAAACC-
......((.(((((((((............))))))).))((..((.((((..((........))..)))).))..))......))......- ( -24.50)
>DroPse_CAF1 20949 78 + 1
UGUAACU------------G---GAGUUUUGCCAGCUUAGGCAGAGACACAGGCCGUUUGACUGGAGUGUGCCUAGGCCUAAGAGGAAAACUC
.......------------.---(((((((.((..(((((((..((.((((..(((......)))..)))).))..))))))).))))))))) ( -30.00)
>DroSec_CAF1 17494 92 + 1
AAUAAUCCAGUAGAUCGCUGAACAAGGUUUGCGAUCUCACGCGGAGACACAAGCCGUUUGACAGGAAUGUGCCUAGGCAUAAGAGGCAAACC-
.......((((.....)))).....(((((((..(((...((..((.((((..((........))..)))).))..))...))).)))))))- ( -26.00)
>DroSim_CAF1 639 92 + 1
GAUAAUCCAGUAGAUCGCUGAACAAGGUUUGCGAUCUCACGCGGAGACACAAGCCGUUUGACAGGAAUGUGCCUAGGCGUAGGAGGCAAGCC-
.......((((.....)))).....(((((((..((..((((..((.((((..((........))..)))).))..))))..)).)))))))- ( -31.90)
>DroEre_CAF1 18015 92 + 1
GAUAAUCUCGUAGAUCUCGGACUAAGGUUUGCGAUCCCACGCGGAGACACAAGCCGUUUGACAGGAAUGUGCCUAGGCAUAGGAGGCAAACC-
.....((.((.......))))....(((((((..(((...((..((.((((..((........))..)))).))..))...))).)))))))- ( -25.30)
>DroYak_CAF1 17567 92 + 1
GAUAAUCCAGUAGAUCUCUGACCAGGGUUUGCGAUCUCACGCGGAGACACAAGCCGUUUGACAGGAAUGUGCCUAGGCAUAAGAGGCAAACC-
.......(((.......))).....(((((((..(((...((..((.((((..((........))..)))).))..))...))).)))))))- ( -24.20)
>consensus
GAUAAUCCAGUAGAUCGCUGAACAAGGUUUGCGAUCUCACGCGGAGACACAAGCCGUUUGACAGGAAUGUGCCUAGGCAUAAGAGGCAAACC_
.......(((.......))).....(((((((..(((...((..((.((((..((........))..)))).))..))...))).))))))). (-19.92 = -19.87 +  -0.05)

alignment

secondary structure

dotplot

Window 3

Location	16,315,910 – 16,316,002
Length	92
Sequences	6
Columns	93
Reading direction	reverse
Mean pairwise identity	83.32
Mean single sequence MFE	-34.83
Consensus MFE	-29.46
Energy contribution	-29.60
Covariance contribution	0.14
Combinations/Pair	1.21
Mean z-score	-4.33
Structure conservation index	0.85
SVM decision value	1.89
SVM RNA-class probability	0.981346
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16315910 92 - 22224390
-GGUUUGCCUCUUAUGCCUAGGCACAUUCCUGUCAAACGGCUUGUGUCUCUGCGUGAGAUCGCAAAUCUUGUUCAGCGAUCUACUGGAUUAUC
-(((((((.((((((((..(((((((..((........))..)))))))..))))))))..)))))))..((((((.......)))))).... ( -34.10)
>DroPse_CAF1 20949 78 - 1
GAGUUUUCCUCUUAGGCCUAGGCACACUCCAGUCAAACGGCCUGUGUCUCUGCCUAAGCUGGCAAAACUC---C------------AGUUACA
(((((((((.(((((((..(((((((..((........))..)))))))..)))))))..)).)))))))---.------------....... ( -32.00)
>DroSec_CAF1 17494 92 - 1
-GGUUUGCCUCUUAUGCCUAGGCACAUUCCUGUCAAACGGCUUGUGUCUCCGCGUGAGAUCGCAAACCUUGUUCAGCGAUCUACUGGAUUAUU
-(((((((.((((((((..(((((((..((........))..)))))))..))))))))..)))))))..((((((.......)))))).... ( -36.60)
>DroSim_CAF1 639 92 - 1
-GGCUUGCCUCCUACGCCUAGGCACAUUCCUGUCAAACGGCUUGUGUCUCCGCGUGAGAUCGCAAACCUUGUUCAGCGAUCUACUGGAUUAUC
-((....))((((((((..(((((((..((........))..)))))))..)))))(((((((............)))))))...)))..... ( -31.30)
>DroEre_CAF1 18015 92 - 1
-GGUUUGCCUCCUAUGCCUAGGCACAUUCCUGUCAAACGGCUUGUGUCUCCGCGUGGGAUCGCAAACCUUAGUCCGAGAUCUACGAGAUUAUC
-(((((((.((((((((..(((((((..((........))..)))))))..))))))))..))))))).(((((((.......)).))))).. ( -38.30)
>DroYak_CAF1 17567 92 - 1
-GGUUUGCCUCUUAUGCCUAGGCACAUUCCUGUCAAACGGCUUGUGUCUCCGCGUGAGAUCGCAAACCCUGGUCAGAGAUCUACUGGAUUAUC
-(((((((.((((((((..(((((((..((........))..)))))))..))))))))..)))))))(..((.((....))))..)...... ( -36.70)
>consensus
_GGUUUGCCUCUUAUGCCUAGGCACAUUCCUGUCAAACGGCUUGUGUCUCCGCGUGAGAUCGCAAACCUUGUUCAGCGAUCUACUGGAUUAUC
.(((((((.((((((((..(((((((..((........))..)))))))..))))))))..)))))))......................... (-29.46 = -29.60 +   0.14)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:38 2006