| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,314,120 – 16,314,229 |
| Length | 109 |
| Max. P | 0.651784 |
| Location | 16,314,120 – 16,314,229 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 87.69 |
| Mean single sequence MFE | -31.97 |
| Consensus MFE | -26.59 |
| Energy contribution | -26.27 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16314120 109 - 22224390 UUCAGCUGGGUUGUACACGGUGCAGCGACUAUUUGAAUAAUUGUAAAGUGCCGUUUACAACUAUCGCAAAACGGUUGGAAGCUUUUUAGGAUCGAACAUUGACCGCAAC (((((((((((((((.((((..(.((((.(((....))).))))...)..)))).))))))).........)))))))).........((.((((...))))))..... ( -28.10) >DroSec_CAF1 15743 107 - 1 UUCAGCUG-GUUGUACACGGUGCAGCGACUAUUUGAAUAAUUGCGAAGCGCCGUUUACAACUAUCGCAAACCGGUUGGAAUCGU-UUAGGAUCCAACAUUGACCGCAAC .(((((((-((((((.(((((((.((((.(((....))).))))...))))))).))))))))..))......((((((.((..-...)).))))))..)))....... ( -36.80) >DroYak_CAF1 15686 107 - 1 UUCAGCUG-GUUGUACACGGUGCAGCGGCUAUUGGAAUAAAUGCAAAGCGCCGUUUACAACUAACACAAAACGGUUGAAAGCUU-UCGGGAACCCACAUUGAUCGCAAC ((((((((-((((((.(((((((....((.(((......)))))...))))))).))))))..........)))))))).((..-((((....)).....))..))... ( -31.00) >consensus UUCAGCUG_GUUGUACACGGUGCAGCGACUAUUUGAAUAAUUGCAAAGCGCCGUUUACAACUAUCGCAAAACGGUUGGAAGCUU_UUAGGAUCCAACAUUGACCGCAAC ((((((((.((((((.(((((((.((((.(((....))).))))...))))))).))))))..........)))))))).............................. (-26.59 = -26.27 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:36 2006