Locus 6507

Sequence ID X_DroMel_CAF1
Location 16,313,916 – 16,314,010
Length 94
Max. P 0.823004
window10629

overview

Window 9

Location 16,313,916 – 16,314,010
Length 94
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -26.07
Consensus MFE -20.55
Energy contribution -22.55
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.41
Structure conservation index 0.79
SVM decision value 0.69
SVM RNA-class probability 0.823004
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16313916 94 - 22224390
C----AUA----CAUAUAUCGAUAUUUAAGCCAUCUAUGUGCGUGUGUAUCUAUGGGUGUACGUGGUUUUCUUUCGCUCAAUAUGUGUGUGCUAAACGCUAC
(----(((----((((((((((.....(((((((.((..(.((((......)))).)..)).)))))))....)))....)))))))))))........... ( -25.10)
>DroSec_CAF1 15535 98 - 1
C----AUACAUACAUAUAUCGAUAUUUAAGCCAUCUAUGUGCGUGUGUAUCUAUGGGUGUACGUGGUUUUCUUUCGCUCAAUAUGUGUGUGUUAUACGCUAC
.----((((((((((((..(((.....(((((((.((..(.((((......)))).)..)).)))))))....)))....)))))))))))).......... ( -27.20)
>DroEre_CAF1 16030 98 - 1
C----AUACAUACAUAUAUCGAUAAUUAAGCCAUCUAUGUGCGUGUGUAUCUAUGGGUGUACGUGGAUUUCUUUCGCUCAAUAUGUGUGUGUUAUACGCUAC
.----..((((((((((((.((.....(((..(((((((((((..(((....)))..)))))))))))..)))....)).)))))))))))).......... ( -27.30)
>DroYak_CAF1 15474 102 - 1
CCUACAUACAUACAUAUAUCGAUAUUUAAGCCAUCUAUGUGCGUGUGUAUCUAUGGGUGUACUUGGAUUUCUUUCGCUCAAUAUGUGUGUGUUAUACGCUAC
.....((((((((((((...(((((....((((....)).))....)))))..((((((.....((....))..)))))))))))))))))).......... ( -24.70)
>consensus
C____AUACAUACAUAUAUCGAUAUUUAAGCCAUCUAUGUGCGUGUGUAUCUAUGGGUGUACGUGGAUUUCUUUCGCUCAAUAUGUGUGUGUUAUACGCUAC
.......((((((((((((.((.....(((..(((((((((((..(((....)))..)))))))))))..)))....)).)))))))))))).......... (-20.55 = -22.55 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:35 2006