Locus 6502

Sequence ID X_DroMel_CAF1
Location 16,303,926 – 16,304,020
Length 94
Max. P 0.811450
window10619

overview

Window 9

Location 16,303,926 – 16,304,020
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 62.00
Mean single sequence MFE -17.40
Consensus MFE -9.26
Energy contribution -9.15
Covariance contribution -0.11
Combinations/Pair 1.42
Mean z-score -1.43
Structure conservation index 0.53
SVM decision value 0.65
SVM RNA-class probability 0.811450
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16303926 94 - 22224390
ACUACGA--AUUGGCAGAUUUCAUCUGAAGUUUGUCGAGUAAAUAUAUCUA-UAUUAUUUCAAGCUUUAAGGGUA-CGAUUUACCCGUUCCCAAAUAU
.....((--(((((((((((((....))))))))))))...(((((....)-))))..))).........(((.(-((.......))).)))...... ( -21.20)
>DroPse_CAF1 7279 82 - 1
UUUAAGA--ACGGCCGGAUUU------AAAUGUGUGCGAAAAUUA-UGAUUUUAC---UGCAACUUUUCA--AUA-UGAUAA-AUCUUGAACAAAAAU
(((((((--........(((.------(((.((.(((.(((((..-..)))))..---.))))).))).)--)).-......-.)))))))....... (  -7.49)
>DroSec_CAF1 5649 94 - 1
ACUACGA--AUUGGCAGAUUUCAUCUGAAGUUUGUCGAAUAAAUAUUGAUAUUACUAUUUCAAGUUUUAAGGGUA-CGAUUA-ACCGUUCCCGAAUAA
.......--.((((((((((((....)))))))))))).((((..((((.((....)).))))..)))).(((.(-((....-..))).)))...... ( -22.60)
>DroEre_CAF1 6177 91 - 1
ACUACGA--AUUGGCAGAUUUCACCUGAAGUUUGUCGAAUAAAUAUUUAUAUU-UU--GUCAAGCUUUAAGGGAU-CGGUUA-CCCGUUCCCGAAUAU
.......--.((((((((((((....))))))))))))...............-..--............((((.-(((...-.))).))))...... ( -23.80)
>DroAna_CAF1 6105 94 - 1
CCUACUAACAUUGGCAGAUUUCAAUUGAAGUUUGUCCAAACUAUAUAUACAUU-UUUAUUUAAGCUUUAUGAGUCAACAUUU-UUGGCUCACAAUU--
..........((((((((((((....)))))))).))))..............-...............((((((((.....-)))))))).....-- ( -20.50)
>DroPer_CAF1 4111 82 - 1
UUUAAGA--ACGGCCGGAUUU------AAAUGCGUGCGAAAAUUA-UGAUUUUAC---UGCAACUUUUCA--AUA-UGAUAA-AUCUUGAACAAAAAU
(((((((--...((((.((..------..)).)).))(((((...-((.......---..))..))))).--...-......-.)))))))....... (  -8.80)
>consensus
ACUACGA__AUUGGCAGAUUUCA_CUGAAGUUUGUCCAAAAAAUAUUGAUAUUACU__UUCAAGCUUUAAGGGUA_CGAUUA_ACCGUUCACAAAUAU
..........((((((((((((....))))))))))))............................................................ ( -9.26 =  -9.15 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:25 2006