Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 301,168 – 301,259 |
Length | 91 |
Max. P | 0.722690 |
Location | 301,168 – 301,259 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.62 |
Mean single sequence MFE | -17.22 |
Consensus MFE | -15.11 |
Energy contribution | -14.87 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -1.62 |
Structure conservation index | 0.88 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 301168 91 - 22224390 ---CCCA-------CUUAAAA-CUU--------UUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU ---....-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30) >DroSec_CAF1 44228 91 - 1 ---CCCA-------CUCAAAA-CUU--------CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU ---....-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30) >DroSim_CAF1 64855 91 - 1 ---CCCA-------CUCAAAA-CUU--------CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU ---....-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30) >DroEre_CAF1 43238 94 - 1 AUCCCCA-------CUCAAAA-UUC--------CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU .......-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30) >DroYak_CAF1 65111 102 - 1 AUCCCCA-------CUCAAAA-CUCCCUGCCGCCUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCGU .......-------.......-.........((........(((((((((........)))..((((....))))......))))))......))((((.......)))) ( -19.14) >DroAna_CAF1 57821 99 - 1 ---CCCAAGGAGCCCCCAAGAUCCC--------CUCGUCCUGGCCACACAAUUCAAAAUGUUCGUGUUUAAGCGCUAUUAAGUGGCAAAAAUCGCGCUCACAUCAAGACU ---......((((...((.(((...--------...))).))((((((((........)))..((((....))))......))))).........))))........... ( -19.00) >consensus ___CCCA_______CUCAAAA_CUC________CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU .........................................(((((((((........)))..((((....))))......))))))..........((.......)).. (-15.11 = -14.87 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:47 2006