| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,300,443 – 16,300,563 |
| Length | 120 |
| Max. P | 0.632509 |
| Location | 16,300,443 – 16,300,563 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -37.37 |
| Consensus MFE | -31.70 |
| Energy contribution | -31.87 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16300443 120 - 22224390 CUGCUGUUCCUGGUCAUGUUCAUCUUUGCCAUUUUCGGCAUGUCGUUCUUCAUGCACGUGAAGGAGAAGAGCGGCAUCAACGACGUCUACAACUUCAAGACCUUUGGCCAGAGCAUGAUC ...........((((((((((......((((...(((..((((((((((((.(.(.......).)))))))))))))...))).((((.........))))...))))..)))))))))) ( -36.70) >DroVir_CAF1 2846 120 - 1 CUGCUCUUCCUGGUGAUGUUCAUCUUUGCGAUCUUCGGCAUGUCGUUCUUUAUGCACGUGAAGGAGAAGAGCGGCAUCAACGAUGUCUACAACUUCAAGACGUUUGGCCAGAGCAUGAUU .((((((.(((((((.(((((.((.....))(((((..((((((((.....))).)))))..))))).))))).)))))..(((((((.........))))))).))..))))))..... ( -35.30) >DroGri_CAF1 2994 120 - 1 CUGCUCUUUCUGGUGAUGUUCAUCUUUGCGAUCUUCGGCAUGUCGUUCUUCAUGCACGUGAAGGAGAAGAGCGGCAUCAACGAUGUCUACAACUUCAAGACGUUUGGCCAGAGCAUGAUU .((((((....((((.....))))............(((((((((((((((.(.(.......).)))))))))))))....(((((((.........)))))))..)))))))))..... ( -36.20) >DroWil_CAF1 3375 120 - 1 CUGCUCUUUCUGGUCAUGUUCAUCUUUGCCAUAUUCGGCAUGUCGUUCUUCAUGCAUGUGAAGGAGAAGAGCGGCAUUAACGAUGUCUACAAUUUCAAGACAUUCGGCCAGAGCAUGAUA ............(((((((((.....((((......))))(((((((((((.(.(.......).))))))))))))....((((((((.........))))).)))....))))))))). ( -38.80) >DroAna_CAF1 2756 120 - 1 CUGCUGUUCCUGGUCAUGUUCAUCUUCGCCAUUUUCGGCAUGUCCUUUUUCAUGCACGUGAAGGAGAAGAGCGGCAUCAACGAUGUCUACAACUUCAAGACCUUCGGCCAGAGCAUGAUC ...........((((((((((.(((((.((.(((.(((((((........))))).)).))))).)))))..(((.....(((.((((.........))))..)))))).)))))))))) ( -39.30) >DroPer_CAF1 13 120 - 1 CUGCUGUUCCUGGUCAUGUUCAUCUUCGCGAUCUUCGGCAUGUCGUUCUUCAUGCAUGUGAAGGAGAAGAGCGGCAUCAACGACGUCUACAACUUCAAGACGUUCGGACAGAGCAUGAUC ...........((((((((((......((........))((((((((((((.(.(.......).)))))))))))))...((((((((.........))))).)))....)))))))))) ( -37.90) >consensus CUGCUCUUCCUGGUCAUGUUCAUCUUUGCCAUCUUCGGCAUGUCGUUCUUCAUGCACGUGAAGGAGAAGAGCGGCAUCAACGAUGUCUACAACUUCAAGACGUUCGGCCAGAGCAUGAUC ...........((((((((((.(((((((........))......((((((((....)))))))))))))..(((......(((((((.........)))))))..))).)))))))))) (-31.70 = -31.87 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:20 2006