| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,294,872 – 16,294,964 |
| Length | 92 |
| Max. P | 0.510281 |
| Location | 16,294,872 – 16,294,964 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -2.08 |
| Energy contribution | -2.72 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.11 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16294872 92 - 22224390 ACAGU------------UACAGACAUG---GGCAUUGAA--A---GAAACUUCUUUC-AGUGACGAAACGAGCCUCUUCUCGCUGACUUGCUCUCACUCGUUCUCCAACACAA ...((------------(..(((.(((---(((((((((--(---((....))))))-)))).......((((.((........))...))))...))))))))..))).... ( -22.20) >DroPse_CAF1 10353 104 - 1 AUAGAUUCUUCACCAGCCCCAGAGAUA---GAAAUCGUAUCUGGAGAACCACCCUUCGAAUGGC-----GACUCUCUUCUCGCUGACUUACUCUCAAUCGAUGUCCGUCACA- .............((((....((((.(---((..((((...(((((.......)))))....))-----))...)))))))))))..............(((....)))...- ( -17.80) >DroSec_CAF1 9456 92 - 1 ACAGU------------UACAGACAUG---GGCAUUGAA--A---GAAACUUCUUUC-AGUGACGAAACGAGCCUCUUCUCGCUGACUUGCUCUCACUCGUUCUCCAACACAA ...((------------(..(((.(((---(((((((((--(---((....))))))-)))).......((((.((........))...))))...))))))))..))).... ( -22.20) >DroEre_CAF1 10169 95 - 1 AAAGU------------UACAGACAUUGAAGACAUUGAA--A---GAAACUUUUUUC-AGUGACGAAACAAUCCUCUUCUCGCUGACUUGCUCUCACUCGAUCUCCAACACAA ...((------------(..((((...((((((((((((--(---((....))))))-))))..((.....)).)))))..((......))........).)))..))).... ( -15.30) >DroYak_CAF1 9459 95 - 1 ACAAU------------UACAGACUUG---GGCAUUGAA--AGGAGAAACUUCUUUC-AGUGACGAAACGAUCCUCUUCUCGCUGACUUGCUCUCACUCGUUCUCCAACACAA .....------------.......(((---(((((((((--(((((...))))))))-))))((((...((......))..((......))......))))..)))))..... ( -20.30) >consensus ACAGU____________UACAGACAUG___GGCAUUGAA__A___GAAACUUCUUUC_AGUGACGAAACGAGCCUCUUCUCGCUGACUUGCUCUCACUCGUUCUCCAACACAA .......................................................((.(((((.(((.........))))))))))........................... ( -2.08 = -2.72 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:15 2006