Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,291,986 – 16,292,090 |
Length | 104 |
Max. P | 0.912714 |
Location | 16,291,986 – 16,292,090 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 92.74 |
Mean single sequence MFE | -19.37 |
Consensus MFE | -19.59 |
Energy contribution | -19.37 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.69 |
Structure conservation index | 1.01 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16291986 104 + 22224390 UGCUUGUGUGUGGUUGUAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCUUGGAUUCGUC (((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))............................ ( -17.90) >DroEre_CAF1 7456 95 + 1 UGCUUGUGUGUGGUUGCAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCCU--------- (((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))...................--------- ( -20.10) >DroYak_CAF1 6661 95 + 1 UGCUUGUGUGUGGUUGCAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCCU--------- (((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))...................--------- ( -20.10) >consensus UGCUUGUGUGUGGUUGCAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCCU_________ (((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))............................ (-19.59 = -19.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:14 2006