Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,273,267 – 16,273,371 |
Length | 104 |
Max. P | 0.860272 |
Location | 16,273,267 – 16,273,371 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 89.29 |
Mean single sequence MFE | -27.48 |
Consensus MFE | -25.67 |
Energy contribution | -27.30 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.06 |
Mean z-score | -1.62 |
Structure conservation index | 0.93 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16273267 104 - 22224390 ----CGUUUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCGUUUUACCUAAUCGGGCACUGGCCAAAAUGAUUGACACCUCCUAUACUAA ----(((((((..((((((.((((.((((((........))))(((((.......))))).....)).)))).))))))..))))))).................... ( -27.10) >DroSec_CAF1 10253 108 - 1 UUAGCGUUUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCAUUCUAUCUAAUCGGGCACUGGCCAAAAUGAUUGACACCUUCUAUACUAA (((((((((((..((((((.((((...((((........))))......(((((.......)))))..)))).))))))..))))))).))))............... ( -27.70) >DroEre_CAF1 10224 104 - 1 UUAAC--UUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCUUUAUACCUUAUCGGGCACUGGCCAAAAUGAUUGACACCUCCU--ACUAA .....--((((..((((((.((((((((((........((((.((........)).)))).))).))))))).))))))..))))................--..... ( -26.20) >DroYak_CAF1 9914 101 - 1 UUAGC--UUUGCUCGGUGCGCGAUAAGUAUUGACAAUCAAGUAGCGUUUGAUAGUAGCUUUAUACCUUAUCGGGCACUGACCAAAAUGAUUGACACCUU-----CGAA .....--((((.(((((((.((((((((((..((.((((((.....)))))).))......))).))))))).))))))).))))....((((.....)-----))). ( -28.90) >consensus UUAGC__UUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCUUUAUACCUAAUCGGGCACUGGCCAAAAUGAUUGACACCUCCU__ACUAA ....(((((((.(((((((.((((((((((..((.((((((.....)))))).))......))).))))))).))))))).))))))).................... (-25.67 = -27.30 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:12 2006