Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,272,933 – 16,273,038 |
Length | 105 |
Max. P | 0.570915 |
Location | 16,272,933 – 16,273,038 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.88 |
Mean single sequence MFE | -24.05 |
Consensus MFE | -15.97 |
Energy contribution | -16.97 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.66 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16272933 105 + 22224390 AAAAAUCACAAAUUGGGUGCACACAUAUAGGA--UCAAGGACGAACAGAACAUCAACAAAAGGCACUUGGACAGCUGCUCAUCGCGUGGCCAAGUGCACACAGUUAG ..........(((((.((((((..........--(((((..(....................)..)))))...((..(.......)..))...)))))).))))).. ( -21.05) >DroSec_CAF1 9920 104 + 1 AAAGAUCACAAUUUGUGUGCACACAUAUAGGAUAUCAAGGACGAACAGAACAUCAACAAAAGGCACUUGGCCAG---CUCAUCGCGUGGCCAAGUGCACACAGUUAG ....(((.(.((.((((....)))).)).)))).....................(((.....((((((((((((---(.....)).))))))))))).....))).. ( -29.40) >DroEre_CAF1 9902 100 + 1 AAAAAUCACAAUUUGGGUGCACACAUAUAGGG--UCAGGGUCAAACGGAA--UCAACAAAAGGCACUUGGCCAG---CUCAUCGCAAGGCCAAGUGCACACAGUUAG ............(((.((((((........((--((((((((........--.........))).)))))))..---....((....))....)))))).))).... ( -25.03) >DroYak_CAF1 9594 99 + 1 AAAAAUCACAAUUUGGGUGCACACAUAUAGAG--UCAAAGACGAAUAGAA--UCAACAAAAGGCACUUGGCCAG---CACAUUGCAUGGCCAAGAACACACAGUUA- ............(((.(((............(--((...)))........--.............(((((((((---(.....)).))))))))..))).)))...- ( -20.70) >consensus AAAAAUCACAAUUUGGGUGCACACAUAUAGGA__UCAAGGACGAACAGAA__UCAACAAAAGGCACUUGGCCAG___CUCAUCGCAUGGCCAAGUGCACACAGUUAG ......(((.......)))...................................(((.....(((((((((((.............))))))))))).....))).. (-15.97 = -16.97 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:11 2006