| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,267,568 – 16,267,688 |
| Length | 120 |
| Max. P | 0.629072 |
| Location | 16,267,568 – 16,267,688 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.89 |
| Mean single sequence MFE | -41.28 |
| Consensus MFE | -34.03 |
| Energy contribution | -34.07 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16267568 120 + 22224390 ACCGAUCAUCAGGUGCAGAAUGUGCAGUUCAUCAAAUGCAAGCUGUGCAACGCAGAGUUUGCCUACGAGAAGGGCCUGAAGGUGCAUCUGUUUAAGGUGCACGGAAAGGCCAUCAAGGAU .(((((....((.((((.....)))).)).)))....(((((((.(((...))).)))))))....((....(((((....((((((((.....))))))))....))))).))..)).. ( -41.80) >DroSec_CAF1 4621 119 + 1 ACCGACCAUCAGGUGCAGAAUGUGCAGUUCAUCAAAUGCAAGCUGUGUAACGCAGAGUUUGCUUACGAGAAGGGCCUGAAGGUGCAUCUGUUCAAGGUGCACGGA-AGGCCAUUAAGGAU .((..((.((((((.(.((((.....)))).((....(((((((.((.....)).)))))))....))...).))))))..((((((((.....)))))))))).-.))((.....)).. ( -43.10) >DroWil_CAF1 8459 120 + 1 ACCGACCAUCAAGUGCAGAAUGUUCAGUUCAUUAAGUGCAAACUUUGUAAUGCCGAAUUUGCCUAUGAGAAGGGAUUGAAAGUGCAUCUGUUCAAGGUGCACGGCAAGGCCAUUAAAGAU .((..((...............((((((((.(((((.(((((.((((......))))))))))).)))....)))))))).((((((((.....))))))))))...))........... ( -29.90) >DroYak_CAF1 4663 120 + 1 ACCGAUCAUCAGGUCCAGAAUGUGCAGUUCAUCAAAUGCAAGCUGUGCAACGCUGAGUUUGCCUACGAGAAGGGCCUGAAGGUGCAUCUGUUCAAGGUGCACGGAAGGGCCAUUAAGGAU .((..((.((((((((.((((.....)))).......(((((((..((...))..))))))).........))))))))..((((((((.....))))))))))..)).((.....)).. ( -41.30) >DroMoj_CAF1 8863 120 + 1 ACCGACCAUCAGGUGCAGAACGUGCAGUUCAUCAAGUGCAAGCUCUGCAAUGCGGAGUUCGCCUACGAGAAGGGCCUGAAGGUGCAUCUGUUCAAGGUGCACGGGCGGGCCAUCAAGGAC .(((.((.((((((.(.((((.....))))....((.((.((((((((...)))))))).)))).......).))))))..((((((((.....)))))))))).))).((.....)).. ( -49.10) >DroAna_CAF1 10684 120 + 1 ACCGACCACCAGGUGCAGAACGUGCAGUUCAUCAAGUGCAAGCUCUGCAACGCGGAGUUCGCCUACGAGAAGGGUCUGAAGGUGCAUCUCUUCAAGGUGCACGGGCGGGCCAUCAAGGAC .((((((....)))(((((.(.((((.((....)).)))).).)))))....)))......(((..((....((((((...((((((((.....))))))))...)))))).)).))).. ( -42.50) >consensus ACCGACCAUCAGGUGCAGAAUGUGCAGUUCAUCAAAUGCAAGCUGUGCAACGCAGAGUUUGCCUACGAGAAGGGCCUGAAGGUGCAUCUGUUCAAGGUGCACGGAAAGGCCAUCAAGGAU .((((((.((((((.(.((((.....)))).......(((((((.(((...))).))))))).........).)))))).)))((((((.....)))))).)))................ (-34.03 = -34.07 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:10 2006