Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,821,946 – 1,822,058 |
Length | 112 |
Max. P | 0.697518 |
Location | 1,821,946 – 1,822,058 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.44 |
Mean single sequence MFE | -21.32 |
Consensus MFE | -11.97 |
Energy contribution | -12.30 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.56 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1821946 112 + 22224390 CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCUAAAUACAUUUUUGCGAUUGGCAUUGCCAAAAA-A----AAAACGUAAAAACAAAAGAAAGCAGCGGAGCACGCAAAG--GGCA-A ...(((((((((((.....((((((.........))))))......)))))))))))(((((.....-.----.....((....))...........(((.....)))....--))))-) ( -24.20) >DroPse_CAF1 49113 110 + 1 CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUAAAU-UCUGCGAUUGGCUUUGCCAAAAC------AAAACCAAACAAACAAAGAAAGCAGAAUCAGAGGCAGAA--GCAG-A ..(((((..((((.(((..........(((......)))..((-(((((..((((.((((......)------))).)))).(.......)...))))))).))).)))).)--))))-. ( -20.10) >DroEre_CAF1 22048 117 + 1 CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCUAAAUACACUUUUGCGAUUGGCAAUGCCAAAAAAAAAACAAAACGUAAAAACAAAAGAAAGCAGGGGAGCACGCAAAG--GGCA-A ..(((((..((((((....((((((.........))))))..(((((((..(((((...)))))..............((....))........)))))))...))))))..--))))-) ( -24.40) >DroYak_CAF1 23930 109 + 1 CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUACAUUUUUGCGAUUGGCAUUGCCAAAAA--------GGCGUAAAAACAAAAGAAAGCAGCGGAGCACGCAAAG--GGCA-A ..(((((..((((((...........................((((((((.(((((...)))))...--------..)))))))).........((......))))))))..--))))-) ( -24.50) >DroAna_CAF1 27398 118 + 1 CAUUGCUAAUUGCGCUUAAUAUUUAUAAUUGACCUAAAUACAUUUUUGCGAUUGGCAUUGCCAAAACGG--ACAAUACAAAAAAAAAAAAUAACACAAAAAACGAGGCAAAAACAACAAA ...(((((((((((.....((((((.........))))))......)))))))))))(((((....((.--...............................)).))))).......... ( -17.35) >DroPer_CAF1 47083 110 + 1 CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUAAAU-UCUGCGAUUGGCUUUGCCAAAAC------AAAACCAAACAAACAAAGAAAGCAGAAUCAGAAUCAGAG--GCAG-A ..(((((..(((.(.(((((.......))))).))))....((-(((((..((((.((((......)------))).)))).(.......)...)))))))..........)--))))-. ( -17.40) >consensus CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUACAUUUUUGCGAUUGGCAUUGCCAAAAA______AAAACGAAAAAAAAAAAGAAAGCAGAAGAGCACGCAAAG__GGCA_A ((.(((((((((((.....(((((...........)))))......))))))))))).))............................................................ (-11.97 = -12.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006