Locus 6488

Sequence ID X_DroMel_CAF1
Location 16,264,869 – 16,264,989
Length 120
Max. P 0.525051
window10598

overview

Window 8

Location 16,264,869 – 16,264,989
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.33
Mean single sequence MFE -56.78
Consensus MFE -36.23
Energy contribution -35.73
Covariance contribution -0.50
Combinations/Pair 1.42
Mean z-score -1.71
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.525051
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16264869 120 + 22224390
AUUACGACUACACUGCGCAGCAUGGCGUGAAUGCUUCGUCCGUGGCUGCCUCGCUGCCGCCGAAUGCGGUGGCCAAUGUGGCAGCCGCCGGGGACUCCAAGGUGGCCAGCUGCAGGGCCU
............((..(((((.((((((....))...(((((((((((((.((..(((((((....)))))))...)).)))))))))...)))).........))))))))).)).... ( -55.20)
>DroVir_CAF1 9332 120 + 1
ACUAUGAUUACACGGCGCAGCAUGGCGUGACGGCGGUUGCGGCGGCGGCAUCGCUGCCCGCCAGCGCGGUUGCAAAUGUGGCAGCCGCUGGCGACUCCAAGGUGGCCAGCUGUCGUGCCU
.............(((((.((...))..(((((((((..((((((((....)))))))(((((((..((((((.......)))))))))))))........)..))).))))))))))). ( -63.10)
>DroPse_CAF1 12952 120 + 1
ACUAUGAUUAUACGGCGCAGCAUGGUGUGAACGCAGAGACGGCGGCCGCCUCGCUGCCGCCAAAUGCUGUGGCUAAUGUGGCCGCCGCCGGGGACUCGAAGGUGGCCAGCUGCCGGGCAU
............(((((((((((.(((....)))......((((((.((...)).))))))..)))))))((((.....(((((((..(((....)))..)))))))))))))))..... ( -55.60)
>DroGri_CAF1 9513 120 + 1
ACUAUGAUUAUACGGCUCAGCAUGGCGUGACCGCUGUUGUGGCGGCUGCAUCGCUGCCGGCCAGCGCCGUUGCAAAUGUGGCCGCCGCUGGCGACUCGAAGGUGGCCAGCUGCCGGGCGU
..............((((.(((.((((.(.((((..(((..(((((.((...((.....))..)))))))..)))..)))))))))((((((.(((....))).))))))))).)))).. ( -58.20)
>DroAna_CAF1 8241 120 + 1
ACUACGACUACACGGCUCAGCAUGGCGUAAAUGCCGCCUCGGCAGCCGCCUCCCUGCCGGCCAAUGCCGUCGCCAAUGUGGCAGCUGCCGGCGACUCCAAGGUGGCCAGCUGCCGGGCCU
.............(((((.((((((((....))))((..(((((((((.(.....).))))...)))))..))..))))(((((((((((.(........).))).))))))))))))). ( -55.10)
>DroPer_CAF1 13275 120 + 1
ACUAUGAUUAUACGGCGCAGCAUGGUGUGAACGCAGAGACGGCGGCCGCCUCGCUGCCACCAAAUGCUGUGGCUAAUGUGGCCGCCGCCGGGGACUCGAAGGUGGCCAGCUGCCGGGCAU
............(((((((((((((((.....((((.((.(((....))))).)))))))))..))))))((((.....(((((((..(((....)))..)))))))))))))))..... ( -53.50)
>consensus
ACUAUGAUUACACGGCGCAGCAUGGCGUGAACGCAGAGACGGCGGCCGCCUCGCUGCCGCCCAAUGCCGUGGCAAAUGUGGCAGCCGCCGGCGACUCCAAGGUGGCCAGCUGCCGGGCCU
...........(((((........(((....)))......((((((......)))))).......))))).(((...(..((.((((((...........))))))..))..)..))).. (-36.23 = -35.73 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:06 2006