Locus 6486

Sequence ID X_DroMel_CAF1
Location 16,263,911 – 16,264,001
Length 90
Max. P 0.510840
window10595

overview

Window 5

Location 16,263,911 – 16,264,001
Length 90
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 85.48
Mean single sequence MFE -34.35
Consensus MFE -26.06
Energy contribution -26.09
Covariance contribution 0.03
Combinations/Pair 1.14
Mean z-score -1.93
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.510840
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16263911 90 - 22224390
CUGAU-------GUUGGAC--GUGACCGCUGCUGCUGCAGCUCUGGCUGAAAUCAAGCGGCAGCGACAGCGACAGGCUCUCCACCAUUC---CAGCCACACC
.....-------(((((((--((...((((((((((.((((....))))......))))))))))...)))...((.......))..))---))))...... ( -35.60)
>DroSec_CAF1 915 87 - 1
CUGAU-------GUUGAAC--GUGACCGCUGCUGCUGCAGCUCUGGCUGAAAUCAAGCGGCAGCGACAGCGACAGGCUCUCC---AUUC---CAGCCACACC
.....-------......(--((...((((((((((.((((....))))......))))))))))...)))...((((....---....---.))))..... ( -32.30)
>DroSim_CAF1 69 88 - 1
CUGAU-------GUUGGAC--GUGACCGCUGCUGCUGCAGCUCUGGCUGAAAUCAAGCGGCAGCGACAGCGAAAGGGUCUCC---AUUC--GCAGCCACACC
.....-------.......--(((..((((((((((.((((....))))......))))))))))...(((((.((....))---.)))--))...)))... ( -36.30)
>DroEre_CAF1 1103 87 - 1
CUGAU-------GUUGUGC--GUGACCGCUGCUGCUGCAGCUCUGGCUGAAAUCAAGCGGCAGCGACAGCGACAGGCUCUCC---AUUC---CAGCCACACC
....(-------(((((..--((...((((((((((.((((....))))......)))))))))))).))))))((((....---....---.))))..... ( -34.60)
>DroYak_CAF1 908 87 - 1
CUGAU-------GUUGGAC--GUGACCACUGCUGCUGCAGCUCUGGCUGAAAUCAAGCGGCAGCGACAGCGACAGGCUCUCC---AUUC---CAGCCACACC
.....-------((((((.--(((....((((((((.((((....))))......)))))))).((.(((.....))).)))---))))---))))...... ( -30.20)
>DroAna_CAF1 7550 96 - 1
CUGGAGGAGAAGGCCGGACAGGCGAUUACUGCUGCU--AGC-UUGGCUGAAAUCUAGCGGCAGUGCCAGCGACAAGCUCUCC---CUGCCACCAGCCACGCC
((((.((......))((.((((.((.((((((((((--((.-((......)).))))))))))))..(((.....))).)))---))))).))))....... ( -37.10)
>consensus
CUGAU_______GUUGGAC__GUGACCGCUGCUGCUGCAGCUCUGGCUGAAAUCAAGCGGCAGCGACAGCGACAGGCUCUCC___AUUC___CAGCCACACC
.....................(((..((((((((((.((((....))))......)))))))))).........((((...............)))).))). (-26.06 = -26.09 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:03 2006