Locus 6482

Sequence ID X_DroMel_CAF1
Location 16,261,015 – 16,261,123
Length 108
Max. P 0.874377
window10586 window10587

overview

Window 6

Location 16,261,015 – 16,261,123
Length 108
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 92.53
Mean single sequence MFE -40.03
Consensus MFE -37.13
Energy contribution -37.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.93
SVM decision value 0.89
SVM RNA-class probability 0.874377
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16261015 108 + 22224390
CAUGCUCCAUGGCUGGUGAUUAUUGCACCUGGUGGCCAGCAGAAAACGAAGGCGGCAGCUGGUGGAAUCGCAUCUGCAGCUGCCACAAGUCUUUCUGCAUUGUA----------UACA
.((((....(((((((((.......))))....)))))(((((((((....(.(((((((.(..((......))..)))))))).)..)).)))))))...)))----------)... ( -41.10)
>DroSec_CAF1 9283 112 + 1
CAUGCUCCAUGGCUGGUGAUUAUUGCACCUGGUGGCCAGCAGAAAACGAAGGCGGCAGCUGGUGGAAUCGCAUCUGCAGCUGCCACAAGUCUUUCUGCAUUGUACAC------UUACA
..(((....(((((((((.......))))....)))))(((((((((....(.(((((((.(..((......))..)))))))).)..)).)))))))...)))...------..... ( -39.80)
>DroEre_CAF1 9397 118 + 1
CAUGCUCCAUGGCUGGUGAUUAUUGCACCUGGUGGCCAGCAGAAAACGAAGGCGGCAGCUGGUGGAAUCGCAUCUGCAGCUGCCACAAGUCUUUCUGGAUUAUAUACAUAUAUGUACA
.(((.(((...((((((.((((.......)))).))))))(((((((....(.(((((((.(..((......))..)))))))).)..)).)))))))).))).((((....)))).. ( -39.20)
>consensus
CAUGCUCCAUGGCUGGUGAUUAUUGCACCUGGUGGCCAGCAGAAAACGAAGGCGGCAGCUGGUGGAAUCGCAUCUGCAGCUGCCACAAGUCUUUCUGCAUUGUA_AC_______UACA
.........(((((((((.......))))....)))))(((((((((....(.(((((((.(..((......))..)))))))).)..)).))))))).................... (-37.13 = -37.47 +   0.33)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 7

Location 16,261,015 – 16,261,123
Length 108
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 92.53
Mean single sequence MFE -37.73
Consensus MFE -35.07
Energy contribution -35.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.93
SVM decision value 0.71
SVM RNA-class probability 0.828885
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16261015 108 - 22224390
UGUA----------UACAAUGCAGAAAGACUUGUGGCAGCUGCAGAUGCGAUUCCACCAGCUGCCGCCUUCGUUUUCUGCUGGCCACCAGGUGCAAUAAUCACCAGCCAUGGAGCAUG
(((.----------..((..((((((((....((((((((((..((......))...)))))))))).....))))))))((((.....((((.......)))).))))))..))).. ( -37.40)
>DroSec_CAF1 9283 112 - 1
UGUAA------GUGUACAAUGCAGAAAGACUUGUGGCAGCUGCAGAUGCGAUUCCACCAGCUGCCGCCUUCGUUUUCUGCUGGCCACCAGGUGCAAUAAUCACCAGCCAUGGAGCAUG
.....------((((.((..((((((((....((((((((((..((......))...)))))))))).....))))))))((((.....((((.......)))).))))))..)))). ( -39.30)
>DroEre_CAF1 9397 118 - 1
UGUACAUAUAUGUAUAUAAUCCAGAAAGACUUGUGGCAGCUGCAGAUGCGAUUCCACCAGCUGCCGCCUUCGUUUUCUGCUGGCCACCAGGUGCAAUAAUCACCAGCCAUGGAGCAUG
((((((....))))))...(((((((((....((((((((((..((......))...)))))))))).....))))))..((((.....((((.......)))).)))).)))..... ( -36.50)
>consensus
UGUA_______GU_UACAAUGCAGAAAGACUUGUGGCAGCUGCAGAUGCGAUUCCACCAGCUGCCGCCUUCGUUUUCUGCUGGCCACCAGGUGCAAUAAUCACCAGCCAUGGAGCAUG
(((.................((((((((....((((((((((..((......))...)))))))))).....))))))))((((.....((((.......)))).))))....))).. (-35.07 = -35.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:56 2006