Locus 6481

Sequence ID X_DroMel_CAF1
Location 16,260,790 – 16,260,896
Length 106
Max. P 0.966644
window10585

overview

Window 5

Location 16,260,790 – 16,260,896
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.50
Mean single sequence MFE -30.55
Consensus MFE -27.42
Energy contribution -27.68
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.90
SVM decision value 1.60
SVM RNA-class probability 0.966644
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16260790 106 + 22224390
UUUUGGUUAUUUCUACGUCUUGUUGUGCGUGGAACGGACAGGACAGGAUGCUCUCUUUCUCUUGCCCACAGGCACAAAUACA--------U--AC----AUAUAUAGAGAUAUCCAUAUA
...(((.(((((((((((((((((((.((.....)).)))..))))))))............((((....))))........--------.--..----.....)))))))).))).... ( -28.20)
>DroSec_CAF1 9054 114 + 1
UUUUGGUUAUUUCUACGUCUUGUUGUGCGUGGAACGGACAGGACAGGAUGCUCUCUUUCUCUUGCCCACAGGCACACAUACACACGAAUAU--AC----AUAUAUAGAGAUAUCCAUAUA
...(((.(((((((((((..((((((((.((....((.(((((.((((.....))))..)))))))..)).)))))...))).)))..(((--..----..))))))))))).))).... ( -28.30)
>DroEre_CAF1 9158 120 + 1
UUUUGGUUAUUUCUACGUCUUGUUGUGCGUGGAACGGACAGGACAGGAUGCUCUCUUUCUCUUGCCCACAGGCACACAUACACACGAAUAUAUAUUUAUAUAUAAAGAGAUAUCCAUAUA
...(((.(((((((.(((..((((((((.((....((.(((((.((((.....))))..)))))))..)).)))))...))).)))..((((((....)))))).))))))).))).... ( -30.90)
>DroYak_CAF1 9055 116 + 1
UUUUGGUUAUUUCUACGUCUUGUUGUGCGUGGAACGGACAGGACAGGAUGCUCUCUUUCUCUUGCCCACAGGCACACAUACACACCAGUGUAGAC----AUAUAUAGAGAUAUCCAUAUA
...(((.((((((((..(..((((((((.((....((.(((((.((((.....))))..)))))))..)).))))...(((((....))))))))----).)..)))))))).))).... ( -34.80)
>consensus
UUUUGGUUAUUUCUACGUCUUGUUGUGCGUGGAACGGACAGGACAGGAUGCUCUCUUUCUCUUGCCCACAGGCACACAUACACACGAAUAU__AC____AUAUAUAGAGAUAUCCAUAUA
...(((.(((((((((((((((((((.((.....)).)))..))))))))............((((....))))..............................)))))))).))).... (-27.42 = -27.68 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:54 2006