Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,810,855 – 1,810,992 |
Length | 137 |
Max. P | 0.582671 |
Location | 1,810,855 – 1,810,966 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 92.10 |
Mean single sequence MFE | -42.18 |
Consensus MFE | -36.20 |
Energy contribution | -35.76 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.89 |
Structure conservation index | 0.86 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582671 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1810855 111 + 22224390 ACGCCAAAGUGAUUUGACCUUUUUUUUUGUCGUGUAGCCGCCCGCAUACAUAAGCAAUGCCAGGAGGCGGGCCGCCGAAGGGAUGUAGCAUCCCUUGGCGGGUGUGAGGUG ....((((....))))(((((...............(((((((((........))...(((....)))))))((((.((((((((...)))))))))))))))..))))). ( -41.63) >DroSec_CAF1 19238 106 + 1 ACGUCAAAGUGAUUUGCCUUUU-UUUUUGUCGUGUAGCC----ACAUACAUAAGCAAUGCUAGGAGGCGGGCCGCCGAAGGGGUGUAGCAUCCCUUGGCGGGUGUGCGGUG .(((((......((((((((((-...((((.(((((...----...)))))..))))....))))))))))(((((.((((((((...))))))))))))).)).)))... ( -39.10) >DroSim_CAF1 21313 107 + 1 ACGUCAAAGUGAUUUGCCUUUUUUUUUUGUCGUGUAGCC----GCAUACAUAAGCAAUGCCAGGGGGCGGGCCGCCGAAGGGGUGUAGCAUCCCUUGGCGGGUGUGCGGUG (((.(((((.((.........)).))))).)))...(((----((((((........((((....))))..(((((.((((((((...)))))))))))))))))))))). ( -45.80) >consensus ACGUCAAAGUGAUUUGCCUUUUUUUUUUGUCGUGUAGCC____GCAUACAUAAGCAAUGCCAGGAGGCGGGCCGCCGAAGGGGUGUAGCAUCCCUUGGCGGGUGUGCGGUG (((.(((((...............))))).)))...(((.....(((((........((((....))))..(((((.((((((((...)))))))))))))))))).))). (-36.20 = -35.76 + -0.44)
Location | 1,810,888 – 1,810,992 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -47.13 |
Consensus MFE | -39.28 |
Energy contribution | -38.40 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.83 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1810888 104 + 22224390 GUAGCCGCCCGCAUACAUAAGCAAUGCCAGGAGGCGGGCCGCCGAAGGGAUGUAGCAUCCCUUGGCGGGUGUGAGGUGCGGGGAGGGUUCCGCCCAUGUCGUUG ....((((((.(((((........((((....))))..(((((.((((((((...)))))))))))))))))).)).))))...(((.....)))......... ( -48.70) >DroSec_CAF1 19270 100 + 1 GUAGCC----ACAUACAUAAGCAAUGCUAGGAGGCGGGCCGCCGAAGGGGUGUAGCAUCCCUUGGCGGGUGUGCGGUGGGGGAAGGGCUACGCCCAUGUCGUCG ...(((----.(((((........((((....))))..(((((.((((((((...)))))))))))))))))).))).((.((.((((...))))...)).)). ( -42.60) >DroSim_CAF1 21346 100 + 1 GUAGCC----GCAUACAUAAGCAAUGCCAGGGGGCGGGCCGCCGAAGGGGUGUAGCAUCCCUUGGCGGGUGUGCGGUGGGGGAAGGGCUACGCCCAUGUCGUCG ...(((----((((((........((((....))))..(((((.((((((((...)))))))))))))))))))))).((.((.((((...))))...)).)). ( -50.10) >consensus GUAGCC____GCAUACAUAAGCAAUGCCAGGAGGCGGGCCGCCGAAGGGGUGUAGCAUCCCUUGGCGGGUGUGCGGUGGGGGAAGGGCUACGCCCAUGUCGUCG ...(((.....(((((........((((....))))..(((((.((((((((...)))))))))))))))))).)))..((.(.((((...)))).).)).... (-39.28 = -38.40 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:15 2006