| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,256,953 – 16,257,071 |
| Length | 118 |
| Max. P | 0.998625 |
| Location | 16,256,953 – 16,257,071 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.29 |
| Mean single sequence MFE | -32.06 |
| Consensus MFE | -28.98 |
| Energy contribution | -29.18 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.90 |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.998625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16256953 118 + 22224390 UAAGUAA-AAGAACCAGUGCGAACAAUGUGCGAAAAGUGGGAAACGCGAGCGGCGUGGUCGUUUCCGUCGGAGAGCGGAUAAUAUAGCA-CAUAGUAGUAUAUUGUAGUAGUGGAUGUGG .......-.....(((.(((..(((((((((.....((((....)((.((((((...))))))(((((......))))).......)).-)))....))))))))).))).)))...... ( -33.20) >DroSec_CAF1 5282 118 + 1 UAAGUAA-AAGAACCAGUGCGAACAAUGUGCGAAAAGUGGGUAACGCGAGCGGCGUGGUCGUUUCCGUCGGAGAGCGGAUAAUAUAGCA-CAUAGUUGUAUAUUGUAGUAGUGGAUGUGG .......-.....(((.(((..(((((((((((...(((((..((((.....))))..))...(((((......)))))........))-)....))))))))))).))).)))...... ( -34.70) >DroSim_CAF1 5165 118 + 1 UAAGUAA-AAGAACCAGUGCGAACAAUGUGCGAAAAGUGGGUAACGCGAGCGGCGUGGUCGUUUCCGUCGGAGAGCGGAUAAUAUAGCA-CAUAGUAGUAUAUUGUAGUAGUGGAUGUGG .......-.....(((.(((..(((((((((.....(((((..((((.....))))..))...(((((......)))))........))-)......))))))))).))).)))...... ( -32.30) >DroEre_CAF1 5340 103 + 1 UAAGUAA-AAGAACCAGUGCGAACAAUGUGCGAAAAGUGGGUGACGCGAGCGGCGUGGUCGAUUCCGUCGGAGAGCGGAUAAUAUAGC----------UAUAUUGUAGUAGUGG------ .......-.....(((.(((..(((((((((.....((.((..((((.....))))..)).))(((((......))))).......))----------.))))))).))).)))------ ( -28.50) >DroYak_CAF1 5166 114 + 1 UAAGUAAAAAGAACCAGUGCGAACAAUGUGCGAAAAGUGGGUGACGCGAGCGGCGUGGUCGAUUCCGUCGGAGAGCGGAUAAUAUAGCAGUAUAGUUGUAUAUUGUAGUAGUGG------ .............(((.(((..(((((((((((...((.((..((((.....))))..)).))(((((......)))))................))))))))))).))).)))------ ( -31.60) >consensus UAAGUAA_AAGAACCAGUGCGAACAAUGUGCGAAAAGUGGGUAACGCGAGCGGCGUGGUCGUUUCCGUCGGAGAGCGGAUAAUAUAGCA_CAUAGUAGUAUAUUGUAGUAGUGGAUGUGG .............(((.(((..(((((((((........((..((((.....))))..))...(((((......)))))..................))))))))).))).)))...... (-28.98 = -29.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:42 2006