Locus 6474

Sequence ID X_DroMel_CAF1
Location 16,253,955 – 16,254,071
Length 116
Max. P 0.659972
window10567

overview

Window 7

Location 16,253,955 – 16,254,071
Length 116
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 92.77
Mean single sequence MFE -29.84
Consensus MFE -21.08
Energy contribution -21.68
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.68
Structure conservation index 0.71
SVM decision value 0.27
SVM RNA-class probability 0.659972
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16253955 116 + 22224390
AAAAUCUACAGGAUGUGCAUUCAAAACUUACGAAGGGAUACAUUUUGA-GGGAGGUUCUAUGGAGAUUCUGUGGAUAAUUUCC-GGUGAUUGAGAUUCAGUACUGGAAAAGAGCAAAA
...(((((((((((.(.(((....(((((.((((((....).))))).-...)))))..))).).)))))))))))..(((((-(((.((((.....))))))))))))......... ( -32.40)
>DroSec_CAF1 2293 116 + 1
AAAAUCUACAGGAUGUGGACUCAAAACUUACGAAGGGAUACAUUUUGA-GGGAGGUUCUAUGGAGAUUCUGUGGAUAAUUUCC-GGUGAUUGAGAUUCAGUACUGGAAAAGAGCAAAA
...(((((((((((.....(((((((....(....)......))))))-).....(((....))))))))))))))..(((((-(((.((((.....))))))))))))......... ( -31.50)
>DroSim_CAF1 2188 117 + 1
AAAAUCUACAGGAUGUGCAUUCAAAACUUACGAAGGGAUACAUUUUGA-GGGAGGUUCUAUGGAGAUUCUGUGGAUAAUUUCCUGGUGAUUGAGAUUCAGUACUGGAAAAGUUCAAAA
...(((((((((((.(.(((....(((((.((((((....).))))).-...)))))..))).).)))))))))))..(((((.(((.((((.....))))))))))))......... ( -28.60)
>DroEre_CAF1 2214 110 + 1
AAAAUCUACAGGAUGUGCAUUCAAAACUUACGAAGGGAUACAUUUUGA-GGGAGAUUCUA------UUCUGUGGAUAAUUUCC-GGUGAUUGAGAUUCAGUACUGGAAAAGAGCAAAA
...((((((((((((..(.(((((((....(....)......))))))-)...)....))------))))))))))..(((((-(((.((((.....))))))))))))......... ( -28.60)
>DroYak_CAF1 2207 110 + 1
AAAAUCUACAGGAUGUGU-UUCAAAACUUACGAAGGGAUACAUUUUGAUGGGAGAUUCUA------UUCUGUGGAUAAUUUCC-GGUGUUUGAGAUUCAGUACUGGAAAAGAAUAAAA
...(((((((((((((((-..(............)..)))))))..((((((....))))------))))))))))..(((((-((((((.(.....))))))))))))......... ( -28.10)
>consensus
AAAAUCUACAGGAUGUGCAUUCAAAACUUACGAAGGGAUACAUUUUGA_GGGAGGUUCUAUGGAGAUUCUGUGGAUAAUUUCC_GGUGAUUGAGAUUCAGUACUGGAAAAGAGCAAAA
...(((((((((((......((((((....(....)......))))))..((.....))......)))))))))))..(((((.(((.((((.....))))))))))))......... (-21.08 = -21.68 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:38 2006