| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,252,141 – 16,252,259 |
| Length | 118 |
| Max. P | 0.550379 |
| Location | 16,252,141 – 16,252,259 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.15 |
| Mean single sequence MFE | -32.63 |
| Consensus MFE | -23.49 |
| Energy contribution | -22.97 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16252141 118 - 22224390 UGAAACUCCAACAUAAUCAUACCUAACCGCAGAUAUUCCAAGAGUACGAGGGCAUGACUGGCCACUCGCUGGAGAAGGCGAUCAAGAAGGAGUUCUCCGGCGAUGUGAUGGAGGGCCU .....(((((.((((.((.............................((((((.......))).)))(((((((((..(..........)..))))))))))))))).)))))..... ( -35.50) >DroVir_CAF1 416 111 - 1 UUAAAAAUCUAUUUGA------AC-UUACCAGAUAUUCCAAGAGUACGAAAACAUGACUGGGCACUCGUUCGAGAAGGCGCUCAAAAAGGAGUUCUCGGGCGAUAUUAUGGAGGGUCU ................------..-.....((((.(((((..(((.((......)))))......((((((((((....((((......)))))))))))))).....))))).)))) ( -24.90) >DroPse_CAF1 393 112 - 1 -GGAU-U-C-A-AUAGUUCUAUUC-UUUGUAGAUAUUCCAAGAGUAUGAGGGCAUGACCGGCCACUCGCUGGAGAAGGCCAUCAAGAAGGAGUUCUCCGGUGACAUUAUGGAGGGCCU -((..-(-(-(-...(((((((((-((.(........).))))))...))))).)))))((((.((((((((((((..((........))..)))))))))..(.....)))))))). ( -34.80) >DroYak_CAF1 386 118 - 1 UGAAACGCCAAUUUAAUCCUAACAAUUCGCAGAUAUUCCAAGAGUACGAGGGAAUGACUGGCCACUCGCUGGAGAAGGCCAUCAAGAAGGAGUUCUCCGGCGAUGUGAUGGAGGGCCU ......(((.......(((..........(((.((((((..(....)...)))))).)))..((((((((((((((..((........))..))))))))))).)))..))).))).. ( -41.00) >DroAna_CAF1 387 116 - 1 UGAUU-CCC-AAUAAACGAUCCUAUUCCCCAGAUAUUCCAAGAGUACGAGAACAUGACGGGUCACUCGUUGGAGAAGGCCAUCAAAAAGGAGUUUUCUGGUGACAUUAUGGAAGGUCU .....-...-.......((((((((((.(((((.(((((....((......)).(((..((((.(((....)))..)))).)))....)))))..))))).))....))))..)))). ( -25.10) >DroPer_CAF1 393 113 - 1 -GGAU-CAC-A-AUAGUUCUAUUC-UUUGUAGAUAUUCCAAGAGUAUGAGGGCAUGACUGGCCACUCGCUGGAGAAGGCCAUCAAGAAGGAGUUCUCCGGUGACAUUAUGGAGGGCCU -((..-(..-.-.....(((((..-...)))))...((((.((((..((((((.......))).)))(((((((((..((........))..))))))))).)).)).)))))..)). ( -34.50) >consensus UGAAA_CCC_A_AUAAUCCUACUC_UUCGCAGAUAUUCCAAGAGUACGAGGGCAUGACUGGCCACUCGCUGGAGAAGGCCAUCAAGAAGGAGUUCUCCGGCGACAUUAUGGAGGGCCU ...................................(((((.((((....((......))....))))(((((((((..((........))..))))))))).......)))))..... (-23.49 = -22.97 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:37 2006