Locus 6471

Sequence ID X_DroMel_CAF1
Location 16,230,126 – 16,230,223
Length 97
Max. P 0.837559
window10563

overview

Window 3

Location 16,230,126 – 16,230,223
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -30.00
Consensus MFE -28.46
Energy contribution -28.90
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.95
SVM decision value 0.74
SVM RNA-class probability 0.837559
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16230126 97 + 22224390
GAGCUUGGAGCCAUUAAGGAAAAUGCCUUCAAGCAAUUCGAGUCUAGAAAGUAUGCCGCUGGUAUCAAGCCACUGGCGAGCACUUUGGUUUCGGAUC
..((((((((.((((......)))).)))))))).(((((((.(((((..((.(((((.((((.....)))).))))).))..))))).))))))). ( -36.70)
>DroSim_CAF1 4563 97 + 1
GAGCUUGGAGCCAUUAAGGAAAAUGCCUUCAAGCAAUUCGAGUCUAGAAAGUAUGCCGCGGGUAUCAAGCCACUGGCGAGCACUUUGGUUUCGGAUC
..((((((((.((((......)))).)))))))).(((((((.(((((..((.(((((..(((.....)))..))))).))..))))).))))))). ( -34.60)
>DroEre_CAF1 4826 97 + 1
GAGCUUGGGGCCAUUAAGGAAAAUGCCUUCAAACAAUUCGAGUCUAAAAAGUACGCCGCGGGAAUCAAGCCACUGGCGAGCAGUUUGGUUUCGGAGC
..(.((((((.((((......)))).)))))).)..((((((.(((((..((.(((((..((.......))..))))).))..))))).)))))).. ( -27.40)
>DroYak_CAF1 4555 97 + 1
GAACUUGGAGCCAUUAAGGAAAACGCCUUCAAGCAAUUCGAGUCUAAAAAGUACGCCGCGGGAAUCAAGCCACUGGCAAGCAAUUUGGUUUCGGAGC
...(((((((((.....)).......)))))))...((((((.(((((..((..((((..((.......))..))))..))..))))).)))))).. ( -21.31)
>consensus
GAGCUUGGAGCCAUUAAGGAAAAUGCCUUCAAGCAAUUCGAGUCUAAAAAGUACGCCGCGGGAAUCAAGCCACUGGCGAGCACUUUGGUUUCGGAGC
..((((((((.((((......)))).))))))))..((((((.(((((..((.(((((..((.......))..))))).))..))))).)))))).. (-28.46 = -28.90 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:34 2006