| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,226,195 – 16,226,315 |
| Length | 120 |
| Max. P | 0.756524 |
| Location | 16,226,195 – 16,226,315 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.89 |
| Mean single sequence MFE | -46.29 |
| Consensus MFE | -30.01 |
| Energy contribution | -30.63 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16226195 120 - 22224390 UGUCGCCGUGCGUGGCGUAUCCAAUGUGAUGGGCAUGCUGGAGGACCUCCAGCAGGCUCUUGGCAUACAUGUCGGCUUGCUCAAGGGGCACCUUGAUGUCCUCGAUAGCGCAGUGCGGAU .....(((..(...((((.....((((.(.((((.((((((((...)))))))).)))).).))))...((((((...((((((((....)))))).))..)))))))))).)..))).. ( -52.80) >DroGri_CAF1 1152 120 - 1 GUUCCGGAUGCGUUGCUUUUCCAAUGUGUUGGGCGUGCUGCAGCACCAGCAGCAAGUACUUGGCAUACGCAUCUGAAUGCUCAAGCUGCAACUGGACGGCUUGACAGGCGCACUGCUCAU ((.((((((((((((((...((((....))))((.((((((.......)))))).))....)))).))))))))...((.((((((((........)))))))))))).))......... ( -44.20) >DroMoj_CAF1 1013 120 - 1 GAUCGCUGUGCGUGGCGUGGCCGAUAUGAUGUGCCUGUUGUAGAACUAGCAGCAGAUACUUGGCAUAUGCAUCCGAUUUGUCCAGCUGCAGUUUAAUCACUUGGAAUGCACAUUGAUCAU (((((.(((((((.((((((((((......(((.(((((((.......))))))).)))))))).))))).(((((.......(((....))).......)))))))))))).))))).. ( -40.04) >DroSim_CAF1 639 120 - 1 UGUCACCGUGCGUGGCGUAUCCAAUGUGAUGGGCAUGCUGGAGGAUCUCCAGCAGGCUCUUGGCAUACAUGUCGGCUUGCUCAAGAGGCACCUUGAUGUCCUCGAUAGCGCAGUGCGGAU .....(((..(...((((.....((((.(.((((.((((((((...)))))))).)))).).))))...((((((...(((((((......))))).))..)))))))))).)..))).. ( -49.10) >DroEre_CAF1 904 120 - 1 UGUCGCCGUGCGUGGCGUAUCCAAUGUGAUGGGCGUGCUGGAGGACCUCCAGCAGACUUUUGGCAUACAUGUCGGCUUGCUCAAGGGGCACCUCGAUGUCCUCGAUGGCGCAGUGCGGAU .....(((..(...(((((((..((((.(..((..((((((((...))))))))..))..).))))..(((((((..((((.....))))..)))))))....))).)))).)..))).. ( -45.70) >DroYak_CAF1 633 120 - 1 UGUCGCCGUGCGUGGCGUAUCCAAUGUGAUGGGCGUGCUGGAGGACCUCCAGUAGGCUUUUGGCAUACAUGUCGGCUUGCUCAAGGAGUACCUUGAUGUCCUCGAUGGCGCAGUUCGGAU ((.((((((.(..((((..((((......))))..)))).((((((.....(((((((...((((....)))))))))))((((((....)))))).)))))))))))))))........ ( -45.90) >consensus UGUCGCCGUGCGUGGCGUAUCCAAUGUGAUGGGCGUGCUGGAGGACCUCCAGCAGGCUCUUGGCAUACAUGUCGGCUUGCUCAAGGGGCACCUUGAUGUCCUCGAUGGCGCAGUGCGGAU .....((((((...((((.....((((.(.((((.((((((((...)))))))).)))).).))))...((((((...((((.(((....))).)).))..)))))))))).)))))).. (-30.01 = -30.63 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:31 2006