Locus 6467

Sequence ID X_DroMel_CAF1
Location 16,224,780 – 16,224,900
Length 120
Max. P 0.509296
window10559

overview

Window 9

Location 16,224,780 – 16,224,900
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -31.89
Consensus MFE -20.48
Energy contribution -20.85
Covariance contribution 0.37
Combinations/Pair 1.45
Mean z-score -2.11
Structure conservation index 0.64
SVM decision value -0.05
SVM RNA-class probability 0.509296
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16224780 120 + 22224390
UCGGGCGUCUCACCCUCCUCCGUGAAUAUGGUGUCCGCCUUCUUGGGAUCGAAGGACUUAAGAAUCAUUUCCUUGAGAUGAUUCUCCACCAUGGCCUGGACUUCGGUAACCUUGACGCCC
..(((((((..(((....((((.(..(((((((....(((((........))))).....(((((((((((...))))))))))).)))))))..)))))....)))......))))))) ( -44.80)
>DroVir_CAF1 1461 120 + 1
UCCGGCGUCUCACCCUCCUCGGUGAAUAUCGUAUCCGCUUUUUUCGGAUCAAACGACUUCAGAAUCAUUUCCUUUAAAUGGUUCUCUACCAUCGCCUGGACCUCUGUUACCUUCACACCG
(((((((..(((((......)))))...(((((((((.......)))))...))))....((((((((((.....)))))))))).......)))).))).................... ( -29.50)
>DroGri_CAF1 1500 120 + 1
UCUGGCGUCUCGCCCUCCUCGGUGAAUAUCGUAUCCGCUUUUUUCGGGUCAAACGACUUGAGAAUCAUUUCCUUUAAAUGGUUCUCUACCAUGGCCUGGACCUCGGUCACCUUGACCCCA
...((.((((((((......))))).....((..(((.....(((((((((........(((((((((((.....))))))))))).....)))))))))...)))..))...))).)). ( -36.62)
>DroWil_CAF1 1655 120 + 1
UCGGGCGUCUCACCCUCCUCGGUGAAAAUUGUAUCCGCUUUCUUGGGAUCGAAUGACUUUAGAAUCAUUUCCUUUAAAUGGUUUUCAACCAUAGCCUGGACCUCGGUCACCUUGACGCCG
...(((((((((((......)))))...................((((((((((((........)))).(((.....(((((.....))))).....)))..)))))).))..)))))). ( -34.60)
>DroMoj_CAF1 1451 120 + 1
UCCGGCGUCUCGCCCUCCUCGGUAAAUAUGGUGUCUGCUUUUUUUGGAUCAAACGAUUUUAGUAUCAUCUCCUUUAAGUGAUUCUCUACCAUAGCCUGAACUUCCGUUACUUUCACACCA
((.(((.....(((......)))...(((((((..((((....(((.......)))....))))(((.((......))))).....)))))))))).))..................... ( -18.20)
>DroAna_CAF1 1853 120 + 1
UCAGGCGUCUCGCCCUCUUCUGUGAAUAUAGUGUCAGCUUUCUUCGGAUCAAACGACUUAAGGAUCAUCUCUUUUAGAUGGUUCUCCACCAUUGCCUGCACUUCGGUUACUUUGACACCA
(((((((...)))).......((((....(((((..((..((....))............((((((((((.....))))))))))........))..)))))....))))..)))..... ( -27.60)
>consensus
UCCGGCGUCUCACCCUCCUCGGUGAAUAUCGUAUCCGCUUUCUUCGGAUCAAACGACUUAAGAAUCAUUUCCUUUAAAUGGUUCUCUACCAUAGCCUGGACCUCGGUUACCUUGACACCA
...(((((((((((......))))).....(.((((.........)))))....)))...((((((((((.....))))))))))........)))..(((....)))............ (-20.48 = -20.85 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:29 2006