| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,217,361 – 16,217,468 |
| Length | 107 |
| Max. P | 0.751623 |
| Location | 16,217,361 – 16,217,468 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.56 |
| Mean single sequence MFE | -31.45 |
| Consensus MFE | -17.39 |
| Energy contribution | -17.42 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16217361 107 - 22224390 AUUUAGUAUACGAUUUU-------CAGAUGGCUUCCAACUCAACGAAGAAAAGCAAACCGAGCGGUAUGCGCAUAUUGUGGAUACCGGGCCGAAAGUCCCAUUCCAAGGGUCGU .........((((((((-------..((.((..((((..((......))...(((.(((....))).)))........))))..))(((.(....).)))..))..)))))))) ( -28.50) >DroVir_CAF1 8739 107 - 1 AACGGGGCGUUGAUUUU-------CAGAUGGCUUCCAAUUCAUCUAAGAAAAACAAAUCGUCUGGUUUGCGCAUAUUGUGGAUACCAGGACGAAAAAGCCAUCCGAAAGGUCGA ..((((((.(((.((((-------(((((((........))))))..))))).))).(((((((((.(.(((.....))).).)))).)))))....)))..((....))))). ( -34.20) >DroWil_CAF1 8618 114 - 1 AUUCGGGCACUGAUUUUUUUUUUGUAGAUGGCUUCCAACUCAACGAAGAAAAGCAAGUCAUCUGGUAUGCGCAUUUUGUGGAUACCAGGACGAAAGAGUCAUCCGAAGGGACAC .((((((...((((((((((.((.((((((((((.(...((......))...).)))))))))(((((.(((.....))).)))))).)).))))))))))))))))....... ( -34.80) >DroYak_CAF1 7392 107 - 1 AUUCAGUAUACGAUUUU-------CAGAUGGCUUCCAAUUCAACGAAGAAAAGCAAAUCCAGCGGUAUGCGCAUAUUGUGGAUACCGGGUCGAAAGUCCCAUUCCAAGGGUCGG ..........(((((((-------..((..((((....(((......))))))).........(((((.(((.....))).)))))(((.(....).)))..))..))))))). ( -28.60) >DroMoj_CAF1 7872 107 - 1 AAUAGGGCGUUGAUUUU-------CAGAUGGCUUCGAAUUCAUCUAAGAAAAACAAAUCGUCUGGUUUACGCAUAUUGUGGAUACCAGGACGAAAAAGCCAUCCGAAAGGUCGA .........((((((((-------(.((((((((....(((......))).......(((((((((...(((.....)))...)))).)))))..)))))))).)))).))))) ( -32.50) >DroAna_CAF1 12826 107 - 1 ACUUUGUAAACGAUUUU-------CAGAUGGCUUCUAAUUCUUCGAAGAAAAGCAAAUCUUCCGGUAUGCGUAUUCUGUGGAUACCGGGGCGUAAGCCCCACUCCAAGGGUCGC ..........(((((((-------..((.((..((((.........((((..(((.(((....))).)))...)))).))))..))(((((....)))))..))..))))))). ( -30.10) >consensus AUUCGGGAAACGAUUUU_______CAGAUGGCUUCCAAUUCAACGAAGAAAAGCAAAUCGUCCGGUAUGCGCAUAUUGUGGAUACCAGGACGAAAGACCCAUCCCAAGGGUCGA ..........(((((((.........(((((((((.........))))............((((((((.(((.....))).)))))))).........)))))...))))))). (-17.39 = -17.42 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:24 2006