Locus 6463

Sequence ID X_DroMel_CAF1
Location 16,216,649 – 16,216,741
Length 92
Max. P 0.578319
window10552

overview

Window 2

Location 16,216,649 – 16,216,741
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 83.80
Mean single sequence MFE -33.99
Consensus MFE -24.22
Energy contribution -24.75
Covariance contribution 0.53
Combinations/Pair 1.21
Mean z-score -1.93
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.578319
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16216649 92 + 22224390
UUAGCCAGUGGCGAAGAAUCGGUUGCUAUCGAUGCUGUGGUUCCCGCAGAGCUAUUUAGCACCACAUCGGUGUCCUGUGCUGCUGGAAAA---CU
....((((..(((.((.((((((....)))))).((((((...)))))).........(((((.....))))).)).)))..))))....---.. ( -32.20)
>DroPse_CAF1 8567 95 + 1
UUUACCAGUGGCGAGGAUGUCGUUGCUAUCGAAGCUGUCGUGCCUGCCGAGCUGUUAAGUGCCAGUUCUGCCUCGGCUGUUGCUGCCAAAUGUCC
......((..((((.....))))..))...(.(((...((.(((.((.((((((........)))))).))...)))))..)))..)........ ( -25.40)
>DroSec_CAF1 6721 92 + 1
UUGGCCAGUGGCGAAGAGUUGGUUGCUAUCGAUGCUGUGGUUCCCGCCGAGCUAUUUAGCACCACAUCGGUAUCCUGUGCUACUGGCAUA---UU
...((((((((((..((..((((.((((.....(((.((((....)))))))....))))))))..))((...))..))))))))))...---.. ( -35.00)
>DroSim_CAF1 6407 92 + 1
UUGGCCAGUGGCGAAGAGUUGGUUGCUAUCGAUGCUGUGGUUCCCGCCGAGCUAUUUAGCACCACAUCGGUAUCCUGUGCUACUGGCAUA---UU
...((((((((((..((..((((.((((.....(((.((((....)))))))....))))))))..))((...))..))))))))))...---.. ( -35.00)
>DroEre_CAF1 6852 92 + 1
UUGGUCAGUGGCGAAGAGGUGGUUGCUAUCGAUGCUGUGGUUCCCGCUGAGCUAUUUAGCACCACUUCGGUGUCCUGUGCUGCUGGCACA---CU
.(((((((..(((..((((((((.((((.....(((((((...))))..)))....))))))))))))((...))..)))..))))).))---.. ( -37.60)
>DroYak_CAF1 6706 92 + 1
UUGGCCAGUGGCGAAGAAGUGGUUGCUAUCGAUGCUGUGGUUCCCGCAGAGCUAUUUAGCACCACUUCUGUGUCCUGUGCUGCCGGCACA---CU
..((((((.((((.(((((((((.((((......((((((...)))))).......))))))))))))).))))))).))).........---.. ( -38.72)
>consensus
UUGGCCAGUGGCGAAGAGGUGGUUGCUAUCGAUGCUGUGGUUCCCGCCGAGCUAUUUAGCACCACAUCGGUGUCCUGUGCUGCUGGCAAA___CU
...((((((((((..((..((((.((((.....(((((((...))))..)))....))))))))..))((...))..))))))))))........ (-24.22 = -24.75 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:23 2006