Locus 6462

Sequence ID X_DroMel_CAF1
Location 16,213,959 – 16,214,068
Length 109
Max. P 0.771037
window10551

overview

Window 1

Location 16,213,959 – 16,214,068
Length 109
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 79.64
Mean single sequence MFE -35.48
Consensus MFE -25.00
Energy contribution -24.70
Covariance contribution -0.30
Combinations/Pair 1.35
Mean z-score -1.51
Structure conservation index 0.70
SVM decision value 0.53
SVM RNA-class probability 0.771037
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16213959 109 + 22224390
AACUGGCCGCCGGCGAAUGCCAUCCCGAGUGCCCCGAGGGCUUUUACAAAUCGGACUUUGGAUGCCAGAAGUGUCACCAUUACUGCAAGACGUGCAAUGGUAUGAU-----AUA----
..(((((..(((((....)))...((((..((((...)))).........)))).....))..)))))..((((((((((...((((.....)))))))))..)))-----)).---- ( -35.60)
>DroPse_CAF1 5320 117 + 1
AGCUGGCAGCCGGCGAAUGCCAUCCGGAGUGUCCCGAGGGCUUCUACAAGUCAGAUUUUGGCUGUCAGAAGUGCCAUCACUAUUGCAAGACAUGCAAUGGUAAGUGUGGA-AAAUGCU
..((((((((((((....)))((((((......)))..(((((....))))).)))...))))))))).....((((.(((((((((.....)))))))))....)))).-....... ( -40.90)
>DroGri_CAF1 4780 118 + 1
AGCUAGCAGCUGGCGAAUGCCAUCCGGAAUGCCCCGAAGGAUUCUACAAAUCGGAGUUUGGGUGCCAGAAAUGCCAUCACUACUGCAAAACCUGCAACGGUUAAUAUAUACAUAUGCA
.((..(((.(((((((((.((.((.((.....)).)).))))))..(((((....)))))...)))))...)))....(((..((((.....))))..)))..............)). ( -28.90)
>DroWil_CAF1 4922 109 + 1
AAUUGGCAGCCGGCGAAUGCCAUCCAGAAUGUCCGGAAGGAUUCUACAAAUCUGAUUUUGGUUGUCAGAAAUGUCAUCAUUAUUGCAAGACUUGCAAUGGUAAGUA-----AGA----
..((((((((((((....)))...((((..((((....))))........)))).....)))))))))..........(((((((((.....))))))))).....-----...---- ( -33.30)
>DroAna_CAF1 8298 113 + 1
AACUGGCAGCCGGCGAAUGUCAUCCAGAGUGUCCCGAGGGUUUCUACAAAUCUGACUUUGGUUGUCAAAAGUGCCACCACUACUGCAAAACGUGCAAUGGUGAGAA-----CUCUGCU
....(((((..((((..((.((.(((((((..((....))......((....))))))))).)).))....))))..(((((.((((.....)))).)))))....-----..))))) ( -32.90)
>DroPer_CAF1 5420 117 + 1
AGCUGGCAGCCGGCGAAUGCCAUCCAGAGUGUCCCGAGGGCUUCUACAAGUCGGAUUUUGGCUGUCAGAAGUGCCAUCACUAUUGCAAGACAUGCAAUGGUAUGUGUGGA-AAAUGCU
..((((((((((((....)))((((((((.((((...)))))))).......))))...))))))))).....((((.(((((((((.....)))))))))....)))).-....... ( -41.31)
>consensus
AACUGGCAGCCGGCGAAUGCCAUCCAGAGUGUCCCGAGGGCUUCUACAAAUCGGAUUUUGGCUGUCAGAAGUGCCAUCACUACUGCAAGACAUGCAAUGGUAAGUA_____AUAUGCU
..((((((((((((....)))....((((...((....)).))))..............)))))))))..........((((.((((.....)))).))))................. (-25.00 = -24.70 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:22 2006