Locus 6460

Sequence ID X_DroMel_CAF1
Location 16,210,232 – 16,210,328
Length 96
Max. P 0.757717
window10548

overview

Window 8

Location 16,210,232 – 16,210,328
Length 96
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 80.77
Mean single sequence MFE -23.10
Consensus MFE -14.41
Energy contribution -14.69
Covariance contribution 0.28
Combinations/Pair 1.24
Mean z-score -1.98
Structure conservation index 0.62
SVM decision value 0.49
SVM RNA-class probability 0.757717
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16210232 96 + 22224390
CAUUUCAUCUUUCCGGAUCCGUUGUUUAAGGAACAGUGGUAUCUGGUGAGUAAAGUAUGUAAUCAU-----CUCUCAUUUAAA---UGCAUGC---UUCAUGAAUCC
...((((((((.(((((((((((((((...))))))))).)))))).)))..(((((((((.....-----............---)))))))---)).)))))... ( -24.63)
>DroSec_CAF1 372 96 + 1
CAUUUCAUCUUUCCGGAUCCGUUGUUUAAGGAACAGUGGUAUCUGGUGAGUAAAGUAUGUAAUCAU-----CACUCAUUUAAA---UGCAUGC---UUCAUGAAUCC
...((((((((.(((((((((((((((...))))))))).)))))).)))..(((((((((.....-----............---)))))))---)).)))))... ( -24.63)
>DroSim_CAF1 374 96 + 1
CAUUUCAUCUUUCCGGAUCCGUUGUUUAAGGAACAGUGGUAUCUGGUGAGUAAAGUAUGUAAUCAU-----CUCUCAUUUAAA---UGCAUGC---UUCAUGAAUCC
...((((((((.(((((((((((((((...))))))))).)))))).)))..(((((((((.....-----............---)))))))---)).)))))... ( -24.63)
>DroWil_CAF1 430 96 + 1
CAUUUAAUAUUCUCCGAUCCGUUGUUUAAGGAACAGUGGUAUUUGGUGAGUAAAGUAUGUAAUCGA-----UGUCGAUUUCAA---UGCAUGCAA-UUCA--AUUCA
.......(((((.((((.(((((((((...)))))))))...)))).)))))..(((((((((((.-----...)))).....---)))))))..-....--..... ( -24.40)
>DroMoj_CAF1 481 107 + 1
CAUCUCAUAUUCUCCGAUCCGUUGUUUAAGGAACAGUGGUAUUUGGUGAGUAAAGUAUGUCAUCAGGCCAUAUUUCAUCUCAACUAUACAUACACAUACAUAUAUCU
.......(((((.((((.(((((((((...)))))))))...)))).)))))..((((((.((.((.................)))))))))).............. ( -19.23)
>DroAna_CAF1 364 96 + 1
CACUCCAUCUUUCCGGAUCCGUUGUUCAAGGAGCAGUGGUAUCUGGUGAGUAAAGUAUGUAAUCAU-----AUCUCACUUAAA---UUCUUAA---UUUUUAAAACC
............(((((((((((((((...))))))))).))))))(((((.(..((((....)))-----)..).)))))..---.......---........... ( -21.10)
>consensus
CAUUUCAUCUUUCCGGAUCCGUUGUUUAAGGAACAGUGGUAUCUGGUGAGUAAAGUAUGUAAUCAU_____CUCUCAUUUAAA___UGCAUGC___UUCAUGAAUCC
........(((.(((((((((((((((...))))))))).)))))).)))....(((((((.........................))))))).............. (-14.41 = -14.69 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:18 2006