Locus 6459

Sequence ID X_DroMel_CAF1
Location 16,207,676 – 16,207,774
Length 98
Max. P 0.937728
window10547

overview

Window 7

Location 16,207,676 – 16,207,774
Length 98
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 82.32
Mean single sequence MFE -20.60
Consensus MFE -13.27
Energy contribution -14.15
Covariance contribution 0.88
Combinations/Pair 1.27
Mean z-score -2.42
Structure conservation index 0.64
SVM decision value 1.26
SVM RNA-class probability 0.937728
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16207676 98 - 22224390
-----CACUUUGCCGAGCAUAAUCCUACAAACGUAUGCAUAUGUACGUGUGUAUA----CAUGUUUCUGGGCAAGUUCAGCUUGUACAUCUCCCAUUUUCCAUCUCA
-----.((...((.((((.....((((.((((((((((((((....)))))))))----)..)))).))))...)))).))..))...................... ( -22.50)
>DroSec_CAF1 11453 107 - 1
UAAUACACUUUGCCGAGCAUAAUCCUACCAACGUAUGCAUAUGUACGUGUGUAUAUGUAUAUGUUUCUGGGCAAGUUCAGCUUGUACAUCUCCCAUUUUCCAUCUCA
...((((....((.((((.....((((..((((((((((((((((....))))))))))))))))..))))...)))).)).))))..................... ( -25.70)
>DroEre_CAF1 12023 93 - 1
-----CACUAUGCCGAACAUAAUCCUACAAACAUAUAUGUACA-AUGUAUG--------UAUGUUUCUGGACAAGUUCAGCUUGUACACAUCCCAUUUUCCAUCUCA
-----.((...((.((((....(((.(((.((((((((.....-)))))))--------).)))....)))...)))).))..))...................... ( -18.60)
>DroYak_CAF1 10522 94 - 1
-----CACUUUGCCGAACAUAAUCCUACAAACAUGUUUGUAUGUACUUUUG--------UAUGUUUCUGGGCAAGUUCAGCUUGUACAUCUCCCAUUUUCCACCUCA
-----...(((((((((((((....((((.(((....))).))))......--------)))))))...))))))................................ ( -15.60)
>consensus
_____CACUUUGCCGAACAUAAUCCUACAAACAUAUGCAUAUGUACGUGUG________UAUGUUUCUGGGCAAGUUCAGCUUGUACAUCUCCCAUUUUCCAUCUCA
......((...((.((((.....((((.((((((((((((((....)))))))......))))))).))))...)))).))..))...................... (-13.27 = -14.15 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:17 2006