Locus 6458

Sequence ID X_DroMel_CAF1
Location 16,204,837 – 16,204,931
Length 94
Max. P 0.730721
window10546

overview

Window 6

Location 16,204,837 – 16,204,931
Length 94
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 77.76
Mean single sequence MFE -18.52
Consensus MFE -14.41
Energy contribution -15.97
Covariance contribution 1.56
Combinations/Pair 1.06
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 0.42
SVM RNA-class probability 0.730721
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16204837 94 - 22224390
UUUCAUCUUCGGCCAAAGCUGAAGAGUUUCAUCGAAAUAAGAGCUUAUUAACGCCGGUUCGAACCCA------AAAAUCCACACGCAAAGAUUUU-----------CAUCA
.....((((((((....))))))))......(((((....(.((........)))..))))).....------((((((..........))))))-----------..... ( -17.20)
>DroSec_CAF1 8738 89 - 1
UUUCAUCUUCGGCCAAAGCUGAAGAGUUUCAUCGAAAUAAGAGCUUAUUAUCGCCGGUUCGAACCCA------AAAAUCCACACGCAAAGAUUUA----------------
.....((((((((....))))))))......(((((....(.((........)))..))))).....------.(((((..........))))).---------------- ( -16.90)
>DroEre_CAF1 9334 108 - 1
UAUUAUCUUCGGUCAAAGCUAAAGAGUUUUAUCGAAAUAACAGCUAA---UCGCUGGCUCGAACCCAAAACCAAAAAUCUACACGCAAAUAUUUUGGGAAGAAUCUCAUCC
.....((((((((.((((((....)))))).((((.....((((...---..))))..))))))).....((((((...............)))))))))))......... ( -21.06)
>DroYak_CAF1 7926 102 - 1
UAUCAUCUUCGGCCAAAGCUGAAGAGUUUCAUCGAAAAAACAGCUAA---UCGCUGGCUCGAACCCA------AAAAUCCACACGCAAAUAUUUUAGAAAGAAUCUCAUCC
..((.((((((((....))))))))......((((.....((((...---..))))..)))).....------.......................))............. ( -18.90)
>consensus
UAUCAUCUUCGGCCAAAGCUGAAGAGUUUCAUCGAAAUAACAGCUAA___UCGCCGGCUCGAACCCA______AAAAUCCACACGCAAAGAUUUU___________CAUCC
.....((((((((....))))))))......(((((....((((........)))).)))))................................................. (-14.41 = -15.97 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:16 2006