Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,202,701 – 16,202,801 |
Length | 100 |
Max. P | 0.760020 |
Location | 16,202,701 – 16,202,801 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 71.12 |
Mean single sequence MFE | -31.22 |
Consensus MFE | -17.24 |
Energy contribution | -16.03 |
Covariance contribution | -1.21 |
Combinations/Pair | 1.32 |
Mean z-score | -1.72 |
Structure conservation index | 0.55 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16202701 100 - 22224390 UUAAGCAUGCGGAUUUCCAGACGCCUAUGCAGCGCGGAAACUGUA---GCAGCUUGCAUAGCA------------CAAUACAGGGUAUCUGUUAGUCGAGGUACUCGACAAUUGC ....(((.((((((.(((......((((((((((((....)....---)).)).)))))))..------------.......))).))))))..((((((...))))))...))) ( -29.06) >DroSec_CAF1 6794 95 - 1 UUAAGCAUGCAGAU-UCCGGACGCCUAUGCAGCCCGGAAACUGUA---GCAGCUUGCACAGCA------------GAACACAGGGUAUCUGUUAUUCGAGGUACUCGACAA---- ....((.(((((.(-(((((.(((....)).).)))))).)))))---)).(((.....))).------------.......((((((((........)))))))).....---- ( -30.30) >DroYak_CAF1 6030 114 - 1 UUAAGCAGACAGAU-UCCAGAUGGCUGAGCAGCGCGGAAAUAGUCCCUGCUGCUUGUAUACCAUAAAACCCCUAAAUAUACAGGGUGUUUUAUAGUCGAGGUACUCGAAUACAGC ....((...(((..-.((....)))))(((((((.(((.....))).)))))))(((((...(((((((((((........)))).)))))))..(((((...)))))))))))) ( -34.30) >consensus UUAAGCAUGCAGAU_UCCAGACGCCUAUGCAGCGCGGAAACUGUA___GCAGCUUGCAUAGCA____________AAAUACAGGGUAUCUGUUAGUCGAGGUACUCGACAA__GC ......................((.((((((((..(....)(((....))))).))))))))....................((((((((........))))))))......... (-17.24 = -16.03 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:16 2006