| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,198,796 – 16,198,888 |
| Length | 92 |
| Max. P | 0.614759 |
| Location | 16,198,796 – 16,198,888 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.64 |
| Mean single sequence MFE | -14.97 |
| Consensus MFE | -9.71 |
| Energy contribution | -9.27 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.614759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16198796 92 - 22224390 AAAAGUCAUUGUCAUACAAACAGAAUGAAUAGCAAAUAAGCUAUUAAUUUUCUUGUUUUUAAAAGAAAUGCCCUUGCACAGAAAUUAUC----CGC ..(((.((((....((.((((((((..((((((......))))))....))).))))).)).....))))..)))..............----... ( -11.80) >DroSec_CAF1 3087 96 - 1 AAAAAUCAUUGUCAUACAGAUAGAAUGAAUAGCAAAAAAGCUAUUCAUUUUCUUGUUUUUAAGAGAAAUGCCCUUGCACAGAAAUUACCACUUCAA ........(((((.....)))))..((((((((......))))))))((((((((....)))))))).(((....)))..(((........))).. ( -18.10) >DroSim_CAF1 5223 85 - 1 AAAAAUCAUUGUCAUACAGACAGAAUGAAUAGCAAAUAAGCUAUUAAUUUUCUUGUUUUUAAAA-----------GCACCGAAAUUAUCACUUCAA .........((((.....))))(((((((((((......)))))(((((((..(((((....))-----------)))..)))))))))).))).. ( -15.00) >consensus AAAAAUCAUUGUCAUACAGACAGAAUGAAUAGCAAAUAAGCUAUUAAUUUUCUUGUUUUUAAAAGAAAUGCCCUUGCACAGAAAUUAUCACUUCAA ..............((.((((((((..((((((......))))))....))).))))).))................................... ( -9.71 = -9.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:15 2006