| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,172,274 – 16,172,392 |
| Length | 118 |
| Max. P | 0.662156 |
| Location | 16,172,274 – 16,172,392 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.46 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -23.10 |
| Energy contribution | -22.62 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16172274 118 + 22224390 AAAAAACGAAAUCUUGUGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGUGCGAUUUUCAUGCCAGCCGUGGGCAA--AAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA .......((((((((.((.((((...((((((.(((.(((....)))...))).))))))(((.......)))..--...)))).)).))))))))(((..((((.....)))).))).. ( -32.20) >DroSec_CAF1 12199 119 + 1 -AAGAACGAAAUCUUGCGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGAGCGAUUUUCAUGCCAGCCGUGGGCAAAAAAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA -......(((((((((((((.(((..((((((.(((.(((....)))...))).))))))(((.......)))....))).))))))..)))))))(((..((((.....)))).))).. ( -32.00) >DroSim_CAF1 12567 119 + 1 -AAGAACGAAAUCUUGCGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGAGCGAUUUUCAUGCCAGCCGUGGGCAAAAAAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA -......(((((((((((((.(((..((((((.(((.(((....)))...))).))))))(((.......)))....))).))))))..)))))))(((..((((.....)))).))).. ( -32.00) >DroEre_CAF1 12632 113 + 1 -A-AUACGAAAUCUCGU-GAGAUUCUGUGAAACUUAAGGAUUU-UUCCAGCGAUUUCCAUACCAGCCGUGGGCAA--AAUGUCUGCAGAAGAUUUCUGUGAUUGGAA-AACCAAAGCACA -.-....(((((((((.-(((((((((.((((..........)-)))))).))))))).........(..(((..--...)))..).).))))))).(((.((((..-..))))..))). ( -26.70) >DroYak_CAF1 13157 113 + 1 -A-AUACGAAAUCUCGU-GAGAUUCUGUGAAAUUUAGGGAUUU-UUCAAGCGAUUUCCAUGCCAGGCGUGGGCAA--AAUGUCUGCAGAAGAUUUCUGUGAUUGGCA-AACCAAAGCACA -.-....((((((((..-..))((((((((.((((.((((...-.((....)).)))).((((.......)))))--))).)).)))))))))))).(((.((((..-..))))..))). ( -29.20) >consensus _AAAAACGAAAUCUUGUGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGAGCGAUUUUCAUGCCAGCCGUGGGCAA__AAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA .......((((((((((.((((((((..........)))))))).....))))..............(..((((.....))))..)....))))))((((.((((.....))))..)))) (-23.10 = -22.62 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:14 2006