Locus 6454

Sequence ID X_DroMel_CAF1
Location 16,170,332 – 16,170,446
Length 114
Max. P 0.546398
window10542

overview

Window 2

Location 16,170,332 – 16,170,446
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -33.96
Consensus MFE -18.74
Energy contribution -18.10
Covariance contribution -0.64
Combinations/Pair 1.21
Mean z-score -2.11
Structure conservation index 0.55
SVM decision value 0.03
SVM RNA-class probability 0.546398
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16170332 114 + 22224390
ACCACAGCCGGCGUG---GGCACCCAACAGCUGUUCACAUACAAAAUGGCCAGCAGUUUUCCGAAUCC---GGCCACGACGAUGGCCCAAGUGGUGGCCACAUCGAACGCAGCCGGCACC
......(((((((((---(.(((((....((((..((.........))..))))..............---(((((......)))))...).)))).))))...(....).))))))... ( -43.50)
>DroVir_CAF1 14743 111 + 1
ACCACAUCCGGCGUU---GGCACCCAACAGCUAUUUACAUACAAAAUGGCCAGUAGUUUCCCCAAUCC---AGCCACAACAAUGGCACAAGUUGUUGCCACCUCCAAUGCGG---CAACU
.((.(((..((.(.(---((((..((((.(((((((.......)))))))..................---.((((......))))....)))).))))).).)).))).))---..... ( -28.30)
>DroGri_CAF1 21090 108 + 1
ACCACAGCCGGCGUU---GGC---CAACAGCUAUUCACAUAUAAAAUGGCCAGUAGUUUCCCCAAUCC---AGCCACGACAAUGGCACAGGUUGUUGCCACUUCAAAUGCGG---GCACC
......(((.(((((---(((---.(((((((..............(((..((....))..)))....---.((((......))))...)))))))))))......)))).)---))... ( -29.80)
>DroWil_CAF1 12955 117 + 1
ACCACGGCCGGAGUUGGUGGCACUCAACAGCUGUUCACAUACAAAAUGGCUAGCAGUUUCCCCAACACAGCAGCCACAACAAUGGCCCAAGUGGUGGCCACAUCAAAUG---CCGGCACC
......(((((.(((.(((((.......(((((((..(((.....)))...)))))))....((.(((....((((......))))....))).)))))))....))).---)))))... ( -36.20)
>DroMoj_CAF1 16032 111 + 1
GCCACCUCCGGCGUU---GGCACCCAACAGCUAUUCACAUACAAAAUGGCCAGUAGUUUCCCCAAUCC---AGCCACAACAAUGGCCCAGGUUGUUGCCACCUCGAAUGCGG---CAACC
((((.....((((((---((...)))))(((((((..(((.....)))...)))))))..........---.))).......))))...(((((((((..........))))---))))) ( -29.40)
>DroAna_CAF1 14462 114 + 1
ACCACGGCUGGCGUU---GGCACCCAGCAGCUGUUUACGUACAAAAUGGCCAGCAGCUUCCCAAACCC---AGCCACAACAAUGGCCCAAGUAGUGGCCACCUCAAACGCCGCCGGCACC
....((((.((((((---(((.......(((((((..(((.....)))...)))))))..........---.))).......((((((.....).))))).....))))))))))..... ( -36.57)
>consensus
ACCACAGCCGGCGUU___GGCACCCAACAGCUAUUCACAUACAAAAUGGCCAGCAGUUUCCCCAAUCC___AGCCACAACAAUGGCCCAAGUUGUGGCCACCUCAAAUGCGG___GCACC
..........(((((...(((.....(((((((((..(((.....)))...)))))))..............((((......))))....))....)))......))))).......... (-18.74 = -18.10 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:13 2006