Locus 6452

Sequence ID X_DroMel_CAF1
Location 16,168,714 – 16,168,811
Length 97
Max. P 0.941292
window10539

overview

Window 9

Location 16,168,714 – 16,168,811
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.06
Mean single sequence MFE -25.90
Consensus MFE -15.61
Energy contribution -17.00
Covariance contribution 1.39
Combinations/Pair 1.05
Mean z-score -2.72
Structure conservation index 0.60
SVM decision value 1.32
SVM RNA-class probability 0.941292
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16168714 97 + 22224390
CUAAAUGCAAAAAGUGUACGCCUAUGUAUGUGCAAGUAUGCAUACAAACAAAA-AAGCGACGCUGUACAAUCAAAAUUGUAUUUUGCGUGCGCAUCCA
....(((((.(...((((((........))))))..).)))))..........-..(((((((.(((((((....)))))))...)))).)))..... ( -25.60)
>DroPse_CAF1 9881 91 + 1
----GCGUGUUUCGUUGACGUGUGCGUGUGUGCGUGCAUGCAUACAAACAAA---AGCGACGCUGUACAAGCGAAAUUUUAUUUUGCGUGCGCAUCUA
----((((((((.(((...((((((((((......)))))))))).)))..)---))).))))((..((.(((((((...))))))).))..)).... ( -30.00)
>DroSim_CAF1 9077 97 + 1
CUAAAUGCAAAAAGUGUACGCCUAUGUAUGUGCAAGUAUGCAUACAAACAAAA-AAGCGACGCUGUACAAUCAAAAUUGUAUUUUGCGUGCGCAUCCA
....(((((.(...((((((........))))))..).)))))..........-..(((((((.(((((((....)))))))...)))).)))..... ( -25.60)
>DroEre_CAF1 9110 97 + 1
CUAAAUGCACUAAGAGUACGCCUAUGUAUGUGCUAGUAUGCAUACAAACAAAA-AAGCGACGCUGUACAAUCAAAAUUGUAUUUUGCGUGCGCAUCCA
....(((((.((..((((((........))))))..)))))))..........-..(((((((.(((((((....)))))))...)))).)))..... ( -26.90)
>DroYak_CAF1 9696 98 + 1
CUAAAUGCUACAAGAGUACGCCUUUGUAUGUGCAAGUAUGCAUACAAACAAAAAAAACGACGCUGUACAAUCAAAAUUGUAUUUUGCGUGCGCAUCCA
....(((((((....))).((.(((((((((........)))))))))...........((((.(((((((....)))))))...))))))))))... ( -23.00)
>DroPer_CAF1 9655 83 + 1
----GCGUGUUUCGUUGACGUAUG--------CGUGCAUGCAUACAAACAAA---AGCGACGCUGUACAAGCGAAAUUUUAUUUUGCGUGCGCAUCUA
----(((((..((...))..))))--------)(((((((((...(((.(((---(....((((.....))))...)))).))))))))))))..... ( -24.30)
>consensus
CUAAAUGCAAUAAGUGUACGCCUAUGUAUGUGCAAGUAUGCAUACAAACAAAA_AAGCGACGCUGUACAAUCAAAAUUGUAUUUUGCGUGCGCAUCCA
.........................((((((........))))))...........(((((((.((((((......))))))...)))).)))..... (-15.61 = -17.00 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:10 2006