Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,167,024 – 16,167,121 |
Length | 97 |
Max. P | 0.991797 |
Location | 16,167,024 – 16,167,121 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -15.35 |
Energy contribution | -15.85 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -3.17 |
Structure conservation index | 0.51 |
SVM decision value | 2.29 |
SVM RNA-class probability | 0.991797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16167024 97 + 22224390 AUCAUCAAUUUAGAAAGUGGCGGUCAUAUGCACUACUAUUAGCAUGAGCACAGUUGU----AUAUGCUUGG----CU----AUGUA------UCAAUGUGUUUGCAUUGAUGCAU ................(((((.(.((((((((..(((....((....))..))))))----)))))..).)----))----))(((------(((((((....)))))))))).. ( -27.10) >DroSim_CAF1 7395 101 + 1 ACCAUUUAUUUAGAAAGUGGCGGUCUUCUGAACUGCUAUUAGCAUGAACACAGUUGUACAUAUAUGCUUGC----UU----AUGUA------UCAAUGUGUUUGCAUUGAUGCAU ...............((((((((((....).)))))))))((((((...((....)).....))))))...----..----(((((------(((((((....)))))))))))) ( -26.60) >DroEre_CAF1 7420 110 + 1 ACAAUCAAUUUAGAGAGUGGCGGUCAUCAGCACUGCUAUUAGCAUGAACACAAUUGU----AUAUGCUUGGUUAUGUAUCAAUGUGUUUGCAUUGAUGCAUAUCGGUU-UUGUAG ((((...........((((((((((....).)))))))))((((((.(((....)))----.))))))((((.((((((((((((....))))))))))))))))...-)))).. ( -33.00) >DroYak_CAF1 8064 97 + 1 ACAAUCAAUUUAGAAAGUAGCGGUCAUCUGCACUGCUAUUAGCAUGAACACAGUUGU----AUAUGCUUGG----UU----AUGUA------UCAAUGUGUUUGCAUUGAUGCAU ..((((((.......((((((((((....).))))))))).(((((.(((....)))----.)))))))))----))----(((((------(((((((....)))))))))))) ( -32.60) >consensus ACAAUCAAUUUAGAAAGUGGCGGUCAUCUGCACUGCUAUUAGCAUGAACACAGUUGU____AUAUGCUUGG____UU____AUGUA______UCAAUGUGUUUGCAUUGAUGCAU ...............((((((((((....).)))))))))((((((.(((....))).....))))))........................(((((((....)))))))..... (-15.35 = -15.85 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:07 2006