Locus 6443

Sequence ID X_DroMel_CAF1
Location 16,149,322 – 16,149,440
Length 118
Max. P 0.635458
window10516

overview

Window 6

Location 16,149,322 – 16,149,440
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.54
Mean single sequence MFE -35.15
Consensus MFE -10.58
Energy contribution -10.70
Covariance contribution 0.12
Combinations/Pair 1.69
Mean z-score -2.22
Structure conservation index 0.30
SVM decision value 0.21
SVM RNA-class probability 0.635458
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16149322 118 - 22224390
AACUUGAGGACAACUAUCUUCUUUUUCGUUGUGUGCAGCAGGUGUAUGACCUUUUGCUUCUGCCAUUG-UAUCAGUGAGCUGAUAAAGCGCACGAAAUUGAUUUG-GUUUGACUCAAAGG
...(((((...(((((...((..((((...((((((.(((((.(((........))).))))).....-((((((....))))))..))))))))))..))..))-)))...)))))... ( -36.50)
>DroGri_CAF1 2288 118 - 1
UGCUUGACAUCAGCGAUGCUCUUCUUGGUCAAUUGCAAUAGAUGGAGUAUCUUUUGCUUUUGCCAUUG-CAGCAAGGAGCUUAAGAAGCGCAUGCAAAUGAUUUG-AUUCGAUGCAAAGG
..(((..((((.((.((((.((((((((.(((..((((.(((((...))))).))))..)))))....-.(((.....))).)))))).))))))....((....-..))))))..))). ( -35.00)
>DroEre_CAF1 2523 118 - 1
AACUUCAGAUCAACUAUCUUCUUUUUCGUUGUGUGCAGCAGGUGAAUAACCUUUUGCUUCUGCCACUG-UAUCAGCGAGCUGAUGAAGCGUACGAAGUUGAUUUG-GUUUGACUCAAAGA
....(((((((((..(((..((((..(((((((.((((.(((..((......))..))))))))))..-((((((....)))))).))))...))))..))))))-))))))........ ( -35.40)
>DroWil_CAF1 1585 118 - 1
AAUUUCAAAUCGACUAUUUUCUUCUUGGUGGUCAACAGCAGAUGCAGAACCUUUUGCUUUUGCCAUUG-ACUGAGUGAGCUUAGGAAUCGUAUGAAACUGAUUUG-AUUUGAGGCAAAUG
..(((((((((..(((..(((..(((...((((((..(((((.(((((....))))).)))))..)))-)))))).)))..)))((((((........)))))))-))))))))...... ( -31.90)
>DroYak_CAF1 1486 118 - 1
AACUUGAGGUCAACUAUCUUCUUUUUCGUUGUGUGUAGCAGGUGAAUAAUCUUUUGUUUUUGCCACUG-UAUCAGCGAGCUGAUAAAGCGCACGAAAUUGAUUUG-GUUUGACUCAAAGA
..(((..(((((((((...((..((((((.((((((.((((..((((((....)))))))))).))..-((((((....))))))..))))))))))..))..))-).))))))..))). ( -35.80)
>DroPer_CAF1 2372 120 - 1
AGCUUCAAAUCCACGAUCUUCCUCUUUGUGCUCAACAGCAGAUGGAAGACCUUCUGUUUCUGCCAUUGGGACGAGGGAAUUUAUGAGCCGCAUCACAUUGAUUUGGGUUCGAUUCGAAGG
..((((.((((.....(((((((((((((.....)))).))).))))))(((((.((..(.......)..))))))).......(((((..(((.....)))...))))))))).)))). ( -36.30)
>consensus
AACUUCAGAUCAACUAUCUUCUUCUUCGUUGUGUGCAGCAGAUGAAUAACCUUUUGCUUCUGCCAUUG_UAUCAGCGAGCUGAUGAAGCGCACGAAAUUGAUUUG_GUUUGACUCAAAGG
..(((..((((((.....................((((.((((.....)))).))))...(((......((((((....))))))....)))................))))))..))). (-10.58 = -10.70 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:50 2006