Locus 6442

Sequence ID X_DroMel_CAF1
Location 16,147,280 – 16,147,374
Length 94
Max. P 0.903692
window10514 window10515

overview

Window 4

Location 16,147,280 – 16,147,374
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 87.90
Mean single sequence MFE -19.83
Consensus MFE -15.79
Energy contribution -15.80
Covariance contribution 0.01
Combinations/Pair 1.14
Mean z-score -2.81
Structure conservation index 0.80
SVM decision value 1.03
SVM RNA-class probability 0.903692
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16147280 94 + 22224390
GUACAGGUAUUCGUGUCAAGGAGUACGAUUUUAAUCCUUGGAAAUCGAUAACCAAACUUAUAGAAAUUGAUUUAAUUUGUUAAGUCAGAAUGAA
.....(((..(((..(((((((............)))))))....)))..))).............(((((((((....)))))))))...... ( -20.10)
>DroSec_CAF1 3147 93 + 1
AUCAAGGU-UACGUGUCAAGAAGUACGAUAUUAAUCCUUGACAAUCGAUAACCAAAAUUAUAAAAAUAGAUUUAAGUUGUUAAAUCAGAAUGAA
.(((.(((-(((((((((((...((......))...)))))))..)).)))))...............(((((((....)))))))....))). ( -18.50)
>DroSim_CAF1 2611 93 + 1
AUCAAGGU-UACGUGUCAAGAAGUACAAUAUUAAUUCUUGACAAUCGAUAACCAAACUUAUAGAAAUAGAUUUAAGUUGUUAAAUCAGAAUAAA
.((..(((-(((((((((((((............)))))))))..)).)))))...............(((((((....))))))).))..... ( -20.90)
>consensus
AUCAAGGU_UACGUGUCAAGAAGUACGAUAUUAAUCCUUGACAAUCGAUAACCAAACUUAUAGAAAUAGAUUUAAGUUGUUAAAUCAGAAUGAA
.....(((...(((((((((((............)))))))))..))...)))...............(((((((....)))))))........ (-15.79 = -15.80 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 16,147,280 – 16,147,374
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 87.90
Mean single sequence MFE -17.27
Consensus MFE -14.48
Energy contribution -15.03
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -2.43
Structure conservation index 0.84
SVM decision value 0.90
SVM RNA-class probability 0.876639
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16147280 94 - 22224390
UUCAUUCUGACUUAACAAAUUAAAUCAAUUUCUAUAAGUUUGGUUAUCGAUUUCCAAGGAUUAAAAUCGUACUCCUUGACACGAAUACCUGUAC
........((((((..(((((.....)))))...)))))).(((..(((.....((((((.((......)).))))))...)))..)))..... ( -13.00)
>DroSec_CAF1 3147 93 - 1
UUCAUUCUGAUUUAACAACUUAAAUCUAUUUUUAUAAUUUUGGUUAUCGAUUGUCAAGGAUUAAUAUCGUACUUCUUGACACGUA-ACCUUGAU
........(((((((....)))))))..........(((..(((((.((..(((((((((.((......)).)))))))))))))-)))..))) ( -19.50)
>DroSim_CAF1 2611 93 - 1
UUUAUUCUGAUUUAACAACUUAAAUCUAUUUCUAUAAGUUUGGUUAUCGAUUGUCAAGAAUUAAUAUUGUACUUCUUGACACGUA-ACCUUGAU
........(((((((....)))))))...............(((((.((..(((((((((.((......)).)))))))))))))-)))..... ( -19.30)
>consensus
UUCAUUCUGAUUUAACAACUUAAAUCUAUUUCUAUAAGUUUGGUUAUCGAUUGUCAAGGAUUAAUAUCGUACUUCUUGACACGUA_ACCUUGAU
........(((((((....)))))))...............(((...((..(((((((((.((......)).)))))))))))...)))..... (-14.48 = -15.03 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:49 2006