Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,802,215 – 1,802,305 |
Length | 90 |
Max. P | 0.981784 |
Location | 1,802,215 – 1,802,305 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 81.85 |
Mean single sequence MFE | -26.74 |
Consensus MFE | -18.68 |
Energy contribution | -19.80 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.65 |
Structure conservation index | 0.70 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1802215 90 - 22224390 AAAGGUCGCAACGUGAUCGUUCCGUCU---UUUCUGUUGGCUGAAGAAAGCGGCUAAAACUGCAAGAGUCGCUAAAAAG--------ACGGAGCAUUGAAA ...((((((...))))))(((((((((---(((....((((.((.....((((......)))).....)))))))))))--------)))))))....... ( -31.40) >DroSec_CAF1 10745 90 - 1 AAAGGUCGCAACGUGAUCGUUCCGUAU---UUUCUGUUGGCUGAAGAAAGCGGCUAAAACAGCAAGAGUCGCUAAAAAG--------GCGGAGCAGUGAAA ...((((((...))))))(((((((.(---((((........))))).(((((((...........)))))))......--------)))))))....... ( -27.80) >DroSim_CAF1 10803 90 - 1 AAAGGUCGCAACGUGAUCGUUCCGUAU---UUUCUGUUGGCUGAAGAAAGCGGCUAAAACUGCAAGAGUCGCUAAAAAG--------ACGGAGCAUCGAAA ...((((((...))))))(((((((.(---((((........))))).(((((((...........)))))))......--------)))))))....... ( -27.50) >DroEre_CAF1 10559 80 - 1 AAAGGUCGCAACGUGAUCGUUCCAUCGCUG-------------AAGAAAGCGUCCAAAACUGCAAGAGUCGCUAAAAAG--------ACGGAGCGAUGAAA ...((((((...))))))(((((..((((.-------------.....))))...............(((........)--------)))))))....... ( -21.30) >DroYak_CAF1 11024 101 - 1 AAAGGUCGCAACGUGAUCGUUCCGUCGCUGCUUCUGAUGGCCAAAGAAAGCGACCAAAACUGCAAGAGUCGCUAAAAAGACGAAAAGACGAAGCGAUGAAA ....(((((..(((..(((((((((((.......))))))........(((((((..........).)))))).....)))))....)))..))))).... ( -25.70) >consensus AAAGGUCGCAACGUGAUCGUUCCGUCU___UUUCUGUUGGCUGAAGAAAGCGGCUAAAACUGCAAGAGUCGCUAAAAAG________ACGGAGCAAUGAAA ...((((((...))))))(((((((......((((.........))))((((((.............))))))..............)))))))....... (-18.68 = -19.80 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:06 2006