Locus 6438

Sequence ID X_DroMel_CAF1
Location 16,132,703 – 16,132,805
Length 102
Max. P 0.980865
window10509

overview

Window 9

Location 16,132,703 – 16,132,805
Length 102
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 72.62
Mean single sequence MFE -27.60
Consensus MFE -20.65
Energy contribution -20.52
Covariance contribution -0.13
Combinations/Pair 1.33
Mean z-score -1.67
Structure conservation index 0.75
SVM decision value 1.87
SVM RNA-class probability 0.980865
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16132703 102 + 22224390
CGGGCUUAUCCGGCAAGAGUUCACCAUCUCUGGACGAUUCCUCGCAUGAGGAACUCACGCUGGAUGAAAUCAAGGUAAGUUUAUU-------ACCAAAAUAGCCGGGUA
(.((((((((((((..((((((..(((....(((....)))....)))..))))))..)))))))))......(((((.....))-------)))......))).)... ( -38.30)
>DroGri_CAF1 8181 101 + 1
CUAGCUCAUCUGGCAAAAGCUCUCCAUCACUGGAGGAUUCUUCACACGAGGAACUAGCACUAGACGAAAUCAGGGUAAGUAUGUACAUUUCAAACUAAC----AA----
.....((.(((((.......((((((....)))))).((((((....))))))......))))).)).......((.(((.((.......)).))).))----..---- ( -19.20)
>DroSec_CAF1 5786 102 + 1
CGGGCUUAUCCGGCAAGAGUUCACCAUCUCUGGACGAUUCCUCGCAUGAGGAACUCACGCUGGAUGAAAUCAAGGUAAGUUUAUU-------AACAAAAUAGCCGGGUA
(.((((((((((((..((((((..(((....(((....)))....)))..))))))..)))))))))...........(((....-------)))......))).)... ( -33.40)
>DroSim_CAF1 5799 102 + 1
CGGGCUUAUCCGGCAAGAGUUCACCGUCUCUGGACGAUUCUUCGCAUGAGGAACUCACGCUGGAUGAAAUCAAGGUAAGUUUAUU-------AACAAAAUAGCCGGGUA
(.((((((((((((..((((((..((((....)))).(((.......)))))))))..)))))))))...........(((....-------)))......))).)... ( -32.60)
>DroEre_CAF1 5807 82 + 1
CGGGCUUAUCCGGCAAGAGUUCACCAUCUCUGGACGAUUCCUCGCAUGAGGAACUCACGUUGGAUGAAAUAAAGGUACG---------------------------GUA
((..((((((((((..((((((..(((....(((....)))....)))..))))))..)))))))).......))..))---------------------------... ( -24.91)
>DroAna_CAF1 17003 99 + 1
CUUCUUCAUCUGGAAAGAGUUCACCUUCAUUAGAGGAUUCUUCGCACGAGGAACUUACCUUAGACGAAGUUCGGGUAUGUUUUUA-------A--AAAA-UGACAAAUA
.......(((((((.........((((.....))))...(((((...((((......))))...)))))))))))).((((....-------.--....-.)))).... ( -17.20)
>consensus
CGGGCUUAUCCGGCAAGAGUUCACCAUCUCUGGACGAUUCCUCGCAUGAGGAACUCACGCUGGAUGAAAUCAAGGUAAGUUUAUU_______AACAAAA_AGCCGGGUA
.....(((((((((..((((((..(((....(((....)))....)))..))))))..))))))))).......................................... (-20.65 = -20.52 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:43 2006