Locus 6437

Sequence ID X_DroMel_CAF1
Location 16,132,468 – 16,132,628
Length 160
Max. P 0.612982
window10507 window10508

overview

Window 7

Location 16,132,468 – 16,132,588
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.39
Mean single sequence MFE -51.08
Consensus MFE -31.11
Energy contribution -32.58
Covariance contribution 1.48
Combinations/Pair 1.34
Mean z-score -1.58
Structure conservation index 0.61
SVM decision value 0.02
SVM RNA-class probability 0.544522
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16132468 120 + 22224390
GGAUCACGAAGGCUGCCGGCUGUCGUCUGGCGGCACCAAAAGUCGGGUGCCAUCUUGGCCCGAUGCAGCCAGCCGGAGGUCGGUUGGCUCGGCUGGCGCAACACAAGGGACGAGCAGCUA
((....(....)...))(((((((((((...((((((........))))))..((((....(.(((.((((((((..((((....))))))))))))))).).)))))))))).))))). ( -55.70)
>DroVir_CAF1 7057 120 + 1
GGAUCGCGUCGCCUGCCGGCUGUUGUUUGGCGCCAUCAAAAGUCUGGUGCCAUUCUGGCACGCUGCAGUCAGCCAGAGGUCGGUUGGCUGGGCUGGAGAAAUUACAAAGAUGAGCAGCUG
((....((((((((((((((((.....((((((((.........))))))))(((((((..((....))..)))))))..)))))))).))))..((....)).....)))).....)). ( -44.90)
>DroGri_CAF1 7982 120 + 1
GGUUCGCGUCGAUUACCGGCUGUUGUUUGGCGUCAUCAAAAGUCUGGGGCCAUUUUGGCCCGCUGCAGUCAACCCGAAGUUGGCUGGCUGGGUUGGAGAAAUUACAAGGAUGAGCAGCUG
((((((...)))..)))(((((((...((((.(((.........))).))))(((..((((((..((((((((.....)))))))))).))))..)))..............))))))). ( -41.90)
>DroWil_CAF1 6353 120 + 1
GGAUCACGACGCCUGCCGGCUGUGGUCUGGCGUCAUCAGAAAUCGGGUGCUAUACUGGCACGUUGCAGUCAACCGGAAGUUGGCUGGCUGGGAUGGCGAAAUACCAAAGAUGAGCAAUUG
((((((((..(((....))))))))))).((.(((((.(....)((.((((((.(..((......(((((((.(....))))))))))..).)))))).....))...)))))))..... ( -42.70)
>DroAna_CAF1 16768 120 + 1
GGAUCGCGCCGGCUGCCAGCGGUUGUCUGGCGCCAUCAAAAGUCUGGCGCCAUUUUAGCUCGCUGUAGCCAGCCGGAGGUCGGUUGGCUUGGCUGGCGAAAUACCAAAGAUGAGCAGCUC
((((..((((((((..(((((((((..((((((((.........))))))))...)))).))))).(((((((((.....))))))))).))))))))..)).))............... ( -58.80)
>DroPer_CAF1 7641 120 + 1
GGCUCGCGGCGUCUGCCGGCCGUCGUCUGGCGGCAUCAGAGGUCUGGGGCCAUACUAGCACGCUGCAGCCAGCCGGAGGUCGGUUGGCUGGGCUGGCGGAAUACCAAAGAUGAGCAGCUA
((((.((..(((((((((((((.(((((((.(((..(((....)))..)))...)))).))))..((((((((((.....)))))))))))))))))((....))..))))).)))))). ( -62.50)
>consensus
GGAUCGCGACGCCUGCCGGCUGUUGUCUGGCGCCAUCAAAAGUCUGGUGCCAUUCUGGCACGCUGCAGCCAGCCGGAGGUCGGUUGGCUGGGCUGGCGAAAUACCAAAGAUGAGCAGCUG
.............((((((((((((..(((((((...........)))))))...))))......((((((((((.....))))))))))))))))))...................... (-31.11 = -32.58 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 16,132,508 – 16,132,628
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -48.55
Consensus MFE -30.05
Energy contribution -29.62
Covariance contribution -0.44
Combinations/Pair 1.45
Mean z-score -1.72
Structure conservation index 0.62
SVM decision value 0.16
SVM RNA-class probability 0.612982
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16132508 120 + 22224390
AGUCGGGUGCCAUCUUGGCCCGAUGCAGCCAGCCGGAGGUCGGUUGGCUCGGCUGGCGCAACACAAGGGACGAGCAGCUACUCAAGGCACUCGCCGAUGCCUGUGCCUUUGACAGGGGCG
.(.((((((((.......(((..(((.((((((((..((((....)))))))))))))))......)))..(((......)))..)))))))).)...((((.((.......)).)))). ( -52.60)
>DroVir_CAF1 7097 120 + 1
AGUCUGGUGCCAUUCUGGCACGCUGCAGUCAGCCAGAGGUCGGUUGGCUGGGCUGGAGAAAUUACAAAGAUGAGCAGCUGCUGAAAGCGCUAGCAGAUGCCUGUGCCUUUGACAGAGGUG
..(((((((((.....)))))(((.(((((((((.......))))))))))))...........(((((((..(((.((((((.......)))))).)))..))..))))).)))).... ( -44.80)
>DroGri_CAF1 8022 120 + 1
AGUCUGGGGCCAUUUUGGCCCGCUGCAGUCAACCCGAAGUUGGCUGGCUGGGUUGGAGAAAUUACAAGGAUGAGCAGCUGCUGAAAGCAUUGGCAGAUGCUUGUGCCUUCGACAGAGGGG
.(((..((((..(((..((((((..((((((((.....)))))))))).))))..)))...........(..((((.((((..(.....)..)))).))))..)))))..)))....... ( -49.10)
>DroWil_CAF1 6393 120 + 1
AAUCGGGUGCUAUACUGGCACGUUGCAGUCAACCGGAAGUUGGCUGGCUGGGAUGGCGAAAUACCAAAGAUGAGCAAUUGCUCAAAGCUUUGGCCGAUGCGUGUGCAUUUGAUAGAGGAG
.(((((((((.((((..((.((((.((((((.(((.....))).)))))).))))))......((((((.(((((....)))))...)))))).......)))))))))))))....... ( -45.20)
>DroAna_CAF1 16808 120 + 1
AGUCUGGCGCCAUUUUAGCUCGCUGUAGCCAGCCGGAGGUCGGUUGGCUUGGCUGGCGAAAUACCAAAGAUGAGCAGCUCCUCAAGGCGCUGACCGAUGCCUGUGCCUUUGACAGGGGUG
.(((.(((((((((((.(((.((((.(((((((((.....))))))))))))).))))))))........((((......)))).)))))))))..((.(((((.......))))).)). ( -49.80)
>DroPer_CAF1 7681 120 + 1
GGUCUGGGGCCAUACUAGCACGCUGCAGCCAGCCGGAGGUCGGUUGGCUGGGCUGGCGGAAUACCAAAGAUGAGCAGCUACUGAAAGCCUUGGCCGAUGCCUGUGCCUUUGACAGAGGCG
((.(..((((.....(((...(((((.(((((((...((((....)))).)))))))((....))........)))))..)))...))))..)))...((((.((.......)).)))). ( -49.80)
>consensus
AGUCUGGUGCCAUUCUGGCACGCUGCAGCCAGCCGGAGGUCGGUUGGCUGGGCUGGCGAAAUACCAAAGAUGAGCAGCUGCUCAAAGCACUGGCCGAUGCCUGUGCCUUUGACAGAGGCG
.(((((..(((.....)))..(((((.(((((((...((((....)))).)))))))(......)........)))))...............)))))((((.((.......)).)))). (-30.05 = -29.62 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:42 2006