Locus 6436

Sequence ID X_DroMel_CAF1
Location 16,131,342 – 16,131,439
Length 97
Max. P 0.699783
window10506

overview

Window 6

Location 16,131,342 – 16,131,439
Length 97
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 92.76
Mean single sequence MFE -23.12
Consensus MFE -21.08
Energy contribution -20.82
Covariance contribution -0.25
Combinations/Pair 1.17
Mean z-score -1.49
Structure conservation index 0.91
SVM decision value 0.35
SVM RNA-class probability 0.699783
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16131342 97 - 22224390
UGCGAUGUUAUUGGGACGAUUCGAUACGUAUAGUAUAGUGGCUCCCAUAAAUAAAUAAAUAAUACUAUGCACAU----AUGUGCAUGUGCAUUAAGCAGUG
(((..((((..((((((.((...((((.....)))).)).).)))))..))))......((((.((((((((..----..))))))).).)))).)))... ( -23.60)
>DroSec_CAF1 4425 97 - 1
UGCGAUGCUAUUGGGACGAUUCGAUACGUAUAGUAUAGUGGCUCCCAUAAAUAAAUAAAUAAUACUAUGUACAU----GUGUGCAUGUGCAUUAAGCAGUG
.....((((..((((((.((...((((.....)))).)).).)))))...................((((((((----(....)))))))))..))))... ( -25.10)
>DroSim_CAF1 4438 97 - 1
UGCGAUGUUAUUGGGACGAUUCGAUACGUAUAGUAUAGUGGCUCCCAUAAAUAAAUAAAUAAUACUAUGUACAU----GUGUGCAUGUGCAUUAAGCAGUG
(((..((((..((((((.((...((((.....)))).)).).)))))..)))).............((((((((----(....)))))))))...)))... ( -25.00)
>DroYak_CAF1 4505 101 - 1
UGCGACGUUAUUGGGGCGAUUCGAUACCUAUAGUAUAGUGGCUACCAUAAAUAAAUAAAUAAUACUAUGUACAUACUUAUGGACAUGUGCAUUAGGCAGUG
(((........((((((.((...((((.....)))).)).))).))).................((((((((((.(....)...))))))).))))))... ( -18.80)
>consensus
UGCGAUGUUAUUGGGACGAUUCGAUACGUAUAGUAUAGUGGCUCCCAUAAAUAAAUAAAUAAUACUAUGUACAU____AUGUGCAUGUGCAUUAAGCAGUG
((((((((...((((((.((...((((.....)))).)).).)))))..................(((((((((....))))))))).)))))..)))... (-21.08 = -20.82 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:40 2006