Locus 6434

Sequence ID X_DroMel_CAF1
Location 16,130,249 – 16,130,357
Length 108
Max. P 0.522826
window10503

overview

Window 3

Location 16,130,249 – 16,130,357
Length 108
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 82.64
Mean single sequence MFE -39.54
Consensus MFE -27.37
Energy contribution -29.38
Covariance contribution 2.02
Combinations/Pair 1.17
Mean z-score -1.51
Structure conservation index 0.69
SVM decision value -0.02
SVM RNA-class probability 0.522826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16130249 108 + 22224390
AACUAGGGCCACACACGGCCCAAGCUUUCCGAUUCCGAUUCUGGCUCCAAACAUUCUUGUUCGGCUUCCGAAUGGCGAAUGCGGCUGGCGAGGAGUGG--GCGUAGAAUU
..((((((((......))))).......((.(((((....(..(((.....((((((..(((((...)))))..).))))).)))..)...))))).)--)..))).... ( -38.70)
>DroSec_CAF1 3330 108 + 1
AACUAGGGCCACACACGGCCCAAGCUUUCCGAUUCCGAUUCUGGCUCCAAACAUUCUCGUUCGGCUUCCGAAUGGCGAAUGCGGCUGGUGUGGAGUGG--GCGUGGAAUU
.....(((((......))))).........(((((((...((.((((((..((..(.((((((.(........).)))))).)..))...)))))).)--)..))))))) ( -42.70)
>DroSim_CAF1 3345 108 + 1
AACUAGGGCCACACACGGCCCAAGCUUUCCGAUUCCGAUUCUGGCUCCAAACAUUCUCGUUCGGCUUCCGAAUGGCGAAUGCGGCUGGUGUGGAGUGG--GCGUGGAAUU
.....(((((......))))).........(((((((...((.((((((..((..(.((((((.(........).)))))).)..))...)))))).)--)..))))))) ( -42.70)
>DroEre_CAF1 3379 108 + 1
AACUAGGGCCACACAGGGCCCAAGCUUUCCGAUUCCGAUUCUGGCUCCAAACAUUCUCGUUCGGCUUCCGAAUGGCGAGUGCGGCUGGCGAGGAGUGG--GCGUGAAAUU
.....(((((......)))))....((((((...(((.((((.(((((...(((((((((((((...)))))))).))))).))..))).)))).)))--.)).)))).. ( -40.00)
>DroYak_CAF1 3411 108 + 1
AACUAGGGCCACACAGGGCCCAAGCUUUCCGAUUCCGAUUCUGGCUCCAAACAUUCUCGUUCGGCUUCCGAAUGGCGAGUGCGGCUGGCGAGGAGUGG--GCGUGGAAUU
.....(((((......))))).....(((((..((((.((((.(((((...(((((((((((((...)))))))).))))).))..))).)))).)))--)..))))).. ( -42.90)
>DroPer_CAF1 3879 88 + 1
UAGCAGAGCUAUGCUGGGCCCCAGCUUAUGA------AUUCUUGCUUCAAUCAUUUUGA---GGC-----ACUGGC---UGUGG-----GUGGAGGGGCUGCGACGAAUU
(((((......)))))((((((.((((((..------.....((((((((.....))))---)))-----).....---.))))-----))...)))))).......... ( -30.22)
>consensus
AACUAGGGCCACACACGGCCCAAGCUUUCCGAUUCCGAUUCUGGCUCCAAACAUUCUCGUUCGGCUUCCGAAUGGCGAAUGCGGCUGGCGAGGAGUGG__GCGUGGAAUU
.....(((((......)))))..((...((.(((((....(..(((.....((((((((((((.....))))))).))))).)))..)...)))))))..))........ (-27.37 = -29.38 +   2.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:37 2006